B0A49_12882 protein (Cryomyces minteri) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

B0A49_12882

Uncharacterized protein. (580 aa)

Predicted Functional Partners:

B0A49_11464

0.991

B0A49_05312

0.991

B0A49_07221

0.990

B0A49_04884

0.990

B0A49_07051

0.989

B0A49_06835

0.986

B0A49_02636

0.986

B0A49_01274

0.986

B0A49_03278

0.986

B0A49_10685

0.984

Your Current Organism:

Cryomyces minteri

NCBI taxonomy Id: 331657
Other names: C. minteri, CBS 116302, CBS 116302 (ex-type); CCFEE 5187, CCFEE 5187

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
B0A49_01274	B0A49_02636	A0A4U0XQZ0	A0A4U0X5Q4	Ribonucloprotein; Common component of the spliceosome and rRNA processing machinery; Belongs to the eukaryotic ribosomal protein eL8 family.	Small nuclear ribonucleoprotein E; Associated with the spliceosome snRNP U1, U2, U4/U6 and U5. Belongs to the snRNP Sm proteins family.	0.993
B0A49_01274	B0A49_03278	A0A4U0XQZ0	A0A4V5NJH3	Ribonucloprotein; Common component of the spliceosome and rRNA processing machinery; Belongs to the eukaryotic ribosomal protein eL8 family.	Uncharacterized protein.	0.990
B0A49_01274	B0A49_04884	A0A4U0XQZ0	A0A4V5NIQ9	Ribonucloprotein; Common component of the spliceosome and rRNA processing machinery; Belongs to the eukaryotic ribosomal protein eL8 family.	WD_REPEATS_REGION domain-containing protein.	0.982
B0A49_01274	B0A49_05312	A0A4U0XQZ0	A0A4U0WJ16	Ribonucloprotein; Common component of the spliceosome and rRNA processing machinery; Belongs to the eukaryotic ribosomal protein eL8 family.	Peptidyl-prolyl cis-trans isomerase; PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides; Belongs to the cyclophilin-type PPIase family.	0.991
B0A49_01274	B0A49_06835	A0A4U0XQZ0	A0A4U0X5E1	Ribonucloprotein; Common component of the spliceosome and rRNA processing machinery; Belongs to the eukaryotic ribosomal protein eL8 family.	Pre-mRNA-processing-splicing factor 8.	0.990
B0A49_01274	B0A49_07051	A0A4U0XQZ0	A0A4U0X0Y1	Ribonucloprotein; Common component of the spliceosome and rRNA processing machinery; Belongs to the eukaryotic ribosomal protein eL8 family.	Uncharacterized protein.	0.989
B0A49_01274	B0A49_07221	A0A4U0XQZ0	A0A4V5NEK3	Ribonucloprotein; Common component of the spliceosome and rRNA processing machinery; Belongs to the eukaryotic ribosomal protein eL8 family.	WD_REPEATS_REGION domain-containing protein.	0.982
B0A49_01274	B0A49_10685	A0A4U0XQZ0	A0A4U0WS64	Ribonucloprotein; Common component of the spliceosome and rRNA processing machinery; Belongs to the eukaryotic ribosomal protein eL8 family.	Pre-mRNA-splicing ATP-dependent RNA helicase prp28.	0.919
B0A49_01274	B0A49_11464	A0A4U0XQZ0	A0A4U0WFD0	Ribonucloprotein; Common component of the spliceosome and rRNA processing machinery; Belongs to the eukaryotic ribosomal protein eL8 family.	Nop domain-containing protein.	0.994
B0A49_01274	B0A49_12882	A0A4U0XQZ0	A0A4U0VPQ1	Ribonucloprotein; Common component of the spliceosome and rRNA processing machinery; Belongs to the eukaryotic ribosomal protein eL8 family.	Uncharacterized protein.	0.986
B0A49_02636	B0A49_01274	A0A4U0X5Q4	A0A4U0XQZ0	Small nuclear ribonucleoprotein E; Associated with the spliceosome snRNP U1, U2, U4/U6 and U5. Belongs to the snRNP Sm proteins family.	Ribonucloprotein; Common component of the spliceosome and rRNA processing machinery; Belongs to the eukaryotic ribosomal protein eL8 family.	0.993
B0A49_02636	B0A49_03278	A0A4U0X5Q4	A0A4V5NJH3	Small nuclear ribonucleoprotein E; Associated with the spliceosome snRNP U1, U2, U4/U6 and U5. Belongs to the snRNP Sm proteins family.	Uncharacterized protein.	0.994
B0A49_02636	B0A49_04884	A0A4U0X5Q4	A0A4V5NIQ9	Small nuclear ribonucleoprotein E; Associated with the spliceosome snRNP U1, U2, U4/U6 and U5. Belongs to the snRNP Sm proteins family.	WD_REPEATS_REGION domain-containing protein.	0.982
B0A49_02636	B0A49_05312	A0A4U0X5Q4	A0A4U0WJ16	Small nuclear ribonucleoprotein E; Associated with the spliceosome snRNP U1, U2, U4/U6 and U5. Belongs to the snRNP Sm proteins family.	Peptidyl-prolyl cis-trans isomerase; PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides; Belongs to the cyclophilin-type PPIase family.	0.939
B0A49_02636	B0A49_06835	A0A4U0X5Q4	A0A4U0X5E1	Small nuclear ribonucleoprotein E; Associated with the spliceosome snRNP U1, U2, U4/U6 and U5. Belongs to the snRNP Sm proteins family.	Pre-mRNA-processing-splicing factor 8.	0.995
B0A49_02636	B0A49_07051	A0A4U0X5Q4	A0A4U0X0Y1	Small nuclear ribonucleoprotein E; Associated with the spliceosome snRNP U1, U2, U4/U6 and U5. Belongs to the snRNP Sm proteins family.	Uncharacterized protein.	0.988
B0A49_02636	B0A49_07221	A0A4U0X5Q4	A0A4V5NEK3	Small nuclear ribonucleoprotein E; Associated with the spliceosome snRNP U1, U2, U4/U6 and U5. Belongs to the snRNP Sm proteins family.	WD_REPEATS_REGION domain-containing protein.	0.982
B0A49_02636	B0A49_10685	A0A4U0X5Q4	A0A4U0WS64	Small nuclear ribonucleoprotein E; Associated with the spliceosome snRNP U1, U2, U4/U6 and U5. Belongs to the snRNP Sm proteins family.	Pre-mRNA-splicing ATP-dependent RNA helicase prp28.	0.995
B0A49_02636	B0A49_11464	A0A4U0X5Q4	A0A4U0WFD0	Small nuclear ribonucleoprotein E; Associated with the spliceosome snRNP U1, U2, U4/U6 and U5. Belongs to the snRNP Sm proteins family.	Nop domain-containing protein.	0.994
B0A49_02636	B0A49_12882	A0A4U0X5Q4	A0A4U0VPQ1	Small nuclear ribonucleoprotein E; Associated with the spliceosome snRNP U1, U2, U4/U6 and U5. Belongs to the snRNP Sm proteins family.	Uncharacterized protein.	0.986