B0A49_04667 protein (Cryomyces minteri) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

B0A49_04667

Aldolase vrtJ. (403 aa)

Predicted Functional Partners:

B0A49_03141

0.867

B0A49_08082

0.840

B0A49_09516

0.840

B0A49_07231

0.829

B0A49_10050

0.829

B0A49_12025

0.823

B0A49_01431

0.817

B0A49_13843

0.815

B0A49_06037

0.815

B0A49_03486

0.803

Your Current Organism:

Cryomyces minteri

NCBI taxonomy Id: 331657
Other names: C. minteri, CBS 116302, CBS 116302 (ex-type); CCFEE 5187, CCFEE 5187

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
B0A49_01431	B0A49_03141	A0A4U0XRH5	A0A4U0XV16	Uncharacterized protein.	Glycine cleavage system P protein; The glycine cleavage system catalyzes the degradation of glycine.	0.477
B0A49_01431	B0A49_04667	A0A4U0XRH5	A0A4U0WTM8	Uncharacterized protein.	Aldolase vrtJ.	0.817
B0A49_01431	B0A49_06037	A0A4U0XRH5	A0A4U0XAW5	Uncharacterized protein.	Threonine dehydratase.	0.848
B0A49_01431	B0A49_07231	A0A4U0XRH5	A0A4U0WPW0	Uncharacterized protein.	Aminotran_5 domain-containing protein.	0.890
B0A49_01431	B0A49_08082	A0A4U0XRH5	A0A4U0WYF3	Uncharacterized protein.	Uncharacterized protein.	0.886
B0A49_01431	B0A49_09516	A0A4U0XRH5	A0A4U0X0N4	Uncharacterized protein.	Uncharacterized protein.	0.886
B0A49_01431	B0A49_10050	A0A4U0XRH5	A0A4V5NDD7	Uncharacterized protein.	Uncharacterized protein.	0.890
B0A49_01431	B0A49_12025	A0A4U0XRH5	A0A4V5NA63	Uncharacterized protein.	PALP domain-containing protein.	0.841
B0A49_01431	B0A49_13843	A0A4U0XRH5	A0A4U0U2Z1	Uncharacterized protein.	Threonine dehydratase, mitochondrial.	0.848
B0A49_03141	B0A49_01431	A0A4U0XV16	A0A4U0XRH5	Glycine cleavage system P protein; The glycine cleavage system catalyzes the degradation of glycine.	Uncharacterized protein.	0.477
B0A49_03141	B0A49_04667	A0A4U0XV16	A0A4U0WTM8	Glycine cleavage system P protein; The glycine cleavage system catalyzes the degradation of glycine.	Aldolase vrtJ.	0.867
B0A49_03141	B0A49_07231	A0A4U0XV16	A0A4U0WPW0	Glycine cleavage system P protein; The glycine cleavage system catalyzes the degradation of glycine.	Aminotran_5 domain-containing protein.	0.868
B0A49_03141	B0A49_08082	A0A4U0XV16	A0A4U0WYF3	Glycine cleavage system P protein; The glycine cleavage system catalyzes the degradation of glycine.	Uncharacterized protein.	0.469
B0A49_03141	B0A49_09516	A0A4U0XV16	A0A4U0X0N4	Glycine cleavage system P protein; The glycine cleavage system catalyzes the degradation of glycine.	Uncharacterized protein.	0.469
B0A49_03141	B0A49_10050	A0A4U0XV16	A0A4V5NDD7	Glycine cleavage system P protein; The glycine cleavage system catalyzes the degradation of glycine.	Uncharacterized protein.	0.868
B0A49_03486	B0A49_04667	A0A4U0X6Z2	A0A4U0WTM8	Epimerase domain-containing protein.	Aldolase vrtJ.	0.803
B0A49_03486	B0A49_06037	A0A4U0X6Z2	A0A4U0XAW5	Epimerase domain-containing protein.	Threonine dehydratase.	0.828
B0A49_03486	B0A49_12025	A0A4U0X6Z2	A0A4V5NA63	Epimerase domain-containing protein.	PALP domain-containing protein.	0.817
B0A49_03486	B0A49_13843	A0A4U0X6Z2	A0A4U0U2Z1	Epimerase domain-containing protein.	Threonine dehydratase, mitochondrial.	0.828
B0A49_04667	B0A49_01431	A0A4U0WTM8	A0A4U0XRH5	Aldolase vrtJ.	Uncharacterized protein.	0.817