B0A49_06701 protein (Cryomyces minteri) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

B0A49_06701

Uncharacterized protein. (331 aa)

Predicted Functional Partners:

B0A49_09846

0.980

B0A49_03289

0.979

B0A49_09859

0.977

B0A49_01541

0.977

B0A49_08485

0.972

B0A49_01172

0.968

B0A49_05251

0.960

B0A49_11162

0.959

B0A49_08643

0.959

B0A49_01413

0.956

Your Current Organism:

Cryomyces minteri

NCBI taxonomy Id: 331657
Other names: C. minteri, CBS 116302, CBS 116302 (ex-type); CCFEE 5187, CCFEE 5187

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
B0A49_01172	B0A49_01413	A0A4U0XKF4	A0A4U0XVU8	WD_REPEATS_REGION domain-containing protein.	MI domain-containing protein.	0.977
B0A49_01172	B0A49_01541	A0A4U0XKF4	A0A4U0XNR4	WD_REPEATS_REGION domain-containing protein.	Uncharacterized protein.	0.987
B0A49_01172	B0A49_03289	A0A4U0XKF4	A0A4U0XFT6	WD_REPEATS_REGION domain-containing protein.	U3 small nucleolar RNA-associated protein 25; DEAD-box RNA helicase-like protein required for pre-18S rRNA processing, specifically at sites A0, A1, and A2.	0.966
B0A49_01172	B0A49_05251	A0A4U0XKF4	A0A4U0XBU0	WD_REPEATS_REGION domain-containing protein.	WD_REPEATS_REGION domain-containing protein.	0.999
B0A49_01172	B0A49_06701	A0A4U0XKF4	A0A4U0X3S6	WD_REPEATS_REGION domain-containing protein.	Uncharacterized protein.	0.968
B0A49_01172	B0A49_08485	A0A4U0XKF4	A0A4U0W8F1	WD_REPEATS_REGION domain-containing protein.	Uncharacterized protein.	0.999
B0A49_01172	B0A49_08643	A0A4U0XKF4	A0A4U0WUX3	WD_REPEATS_REGION domain-containing protein.	Uncharacterized protein.	0.995
B0A49_01172	B0A49_09846	A0A4U0XKF4	A0A4U0WKW8	WD_REPEATS_REGION domain-containing protein.	ATP-dependent RNA helicase dbp8; Belongs to the DEAD box helicase family.	0.961
B0A49_01172	B0A49_09859	A0A4U0XKF4	A0A4U0WI77	WD_REPEATS_REGION domain-containing protein.	Uncharacterized protein.	0.987
B0A49_01172	B0A49_11162	A0A4U0XKF4	A0A4U0VSG0	WD_REPEATS_REGION domain-containing protein.	Uncharacterized protein.	0.995
B0A49_01413	B0A49_01172	A0A4U0XVU8	A0A4U0XKF4	MI domain-containing protein.	WD_REPEATS_REGION domain-containing protein.	0.977
B0A49_01413	B0A49_01541	A0A4U0XVU8	A0A4U0XNR4	MI domain-containing protein.	Uncharacterized protein.	0.975
B0A49_01413	B0A49_03289	A0A4U0XVU8	A0A4U0XFT6	MI domain-containing protein.	U3 small nucleolar RNA-associated protein 25; DEAD-box RNA helicase-like protein required for pre-18S rRNA processing, specifically at sites A0, A1, and A2.	0.710
B0A49_01413	B0A49_05251	A0A4U0XVU8	A0A4U0XBU0	MI domain-containing protein.	WD_REPEATS_REGION domain-containing protein.	0.993
B0A49_01413	B0A49_06701	A0A4U0XVU8	A0A4U0X3S6	MI domain-containing protein.	Uncharacterized protein.	0.956
B0A49_01413	B0A49_08485	A0A4U0XVU8	A0A4U0W8F1	MI domain-containing protein.	Uncharacterized protein.	0.982
B0A49_01413	B0A49_08643	A0A4U0XVU8	A0A4U0WUX3	MI domain-containing protein.	Uncharacterized protein.	0.775
B0A49_01413	B0A49_09846	A0A4U0XVU8	A0A4U0WKW8	MI domain-containing protein.	ATP-dependent RNA helicase dbp8; Belongs to the DEAD box helicase family.	0.550
B0A49_01413	B0A49_09859	A0A4U0XVU8	A0A4U0WI77	MI domain-containing protein.	Uncharacterized protein.	0.975
B0A49_01413	B0A49_11162	A0A4U0XVU8	A0A4U0VSG0	MI domain-containing protein.	Uncharacterized protein.	0.775