B0A49_03712 protein (Cryomyces minteri) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

B0A49_03712

Golgi apparatus membrane protein TVP18. (148 aa)

Predicted Functional Partners:

B0A49_02806

0.943

B0A49_01789

0.931

B0A49_06742

0.902

B0A49_05119

0.902

B0A49_07068

0.894

B0A49_05090

0.894

B0A49_12522

0.873

B0A49_11342

0.873

B0A49_05415

0.802

B0A49_10388

0.802

Your Current Organism:

Cryomyces minteri

NCBI taxonomy Id: 331657
Other names: C. minteri, CBS 116302, CBS 116302 (ex-type); CCFEE 5187, CCFEE 5187

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
B0A49_01789	B0A49_03712	A0A4U0XSZ4	A0A4U0X747	MPN domain-containing protein.	Golgi apparatus membrane protein TVP18.	0.931
B0A49_01789	B0A49_05090	A0A4U0XSZ4	A0A4U0XAP8	MPN domain-containing protein.	Uncharacterized protein.	0.965
B0A49_01789	B0A49_05119	A0A4U0XSZ4	A0A4U0X5E2	MPN domain-containing protein.	ERCC4 domain-containing protein.	0.964
B0A49_01789	B0A49_05415	A0A4U0XSZ4	A0A4U0VIH6	MPN domain-containing protein.	Ribosomal protein; Belongs to the universal ribosomal protein uL1 family.	0.931
B0A49_01789	B0A49_06742	A0A4U0XSZ4	A0A4U0X1I2	MPN domain-containing protein.	Uncharacterized protein.	0.964
B0A49_01789	B0A49_07068	A0A4U0XSZ4	A0A4U0X068	MPN domain-containing protein.	Uncharacterized protein.	0.965
B0A49_01789	B0A49_10388	A0A4U0XSZ4	A0A4U0WH11	MPN domain-containing protein.	Uncharacterized protein.	0.931
B0A49_01789	B0A49_11342	A0A4U0XSZ4	A0A4U0WLT9	MPN domain-containing protein.	ATP-dependent DNA helicase mph1.	0.940
B0A49_01789	B0A49_12522	A0A4U0XSZ4	A0A4U0W8C3	MPN domain-containing protein.	Uncharacterized protein.	0.940
B0A49_02806	B0A49_03712	A0A4U0X7T5	A0A4U0X747	GTP-binding nuclear protein; GTP-binding protein involved in nucleocytoplasmic transport. Required for the import of protein into the nucleus and also for RNA export. Involved in chromatin condensation and control of cell cycle. Belongs to the small GTPase superfamily. Ran family.	Golgi apparatus membrane protein TVP18.	0.943
B0A49_03712	B0A49_01789	A0A4U0X747	A0A4U0XSZ4	Golgi apparatus membrane protein TVP18.	MPN domain-containing protein.	0.931
B0A49_03712	B0A49_02806	A0A4U0X747	A0A4U0X7T5	Golgi apparatus membrane protein TVP18.	GTP-binding nuclear protein; GTP-binding protein involved in nucleocytoplasmic transport. Required for the import of protein into the nucleus and also for RNA export. Involved in chromatin condensation and control of cell cycle. Belongs to the small GTPase superfamily. Ran family.	0.943
B0A49_03712	B0A49_05090	A0A4U0X747	A0A4U0XAP8	Golgi apparatus membrane protein TVP18.	Uncharacterized protein.	0.894
B0A49_03712	B0A49_05119	A0A4U0X747	A0A4U0X5E2	Golgi apparatus membrane protein TVP18.	ERCC4 domain-containing protein.	0.902
B0A49_03712	B0A49_05415	A0A4U0X747	A0A4U0VIH6	Golgi apparatus membrane protein TVP18.	Ribosomal protein; Belongs to the universal ribosomal protein uL1 family.	0.802
B0A49_03712	B0A49_06742	A0A4U0X747	A0A4U0X1I2	Golgi apparatus membrane protein TVP18.	Uncharacterized protein.	0.902
B0A49_03712	B0A49_07068	A0A4U0X747	A0A4U0X068	Golgi apparatus membrane protein TVP18.	Uncharacterized protein.	0.894
B0A49_03712	B0A49_10388	A0A4U0X747	A0A4U0WH11	Golgi apparatus membrane protein TVP18.	Uncharacterized protein.	0.802
B0A49_03712	B0A49_11342	A0A4U0X747	A0A4U0WLT9	Golgi apparatus membrane protein TVP18.	ATP-dependent DNA helicase mph1.	0.873
B0A49_03712	B0A49_12522	A0A4U0X747	A0A4U0W8C3	Golgi apparatus membrane protein TVP18.	Uncharacterized protein.	0.873