B0A49_04549 protein (Cryomyces minteri) - STRING interaction network

Nodes:

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second shell of interactors

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a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

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Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

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textmining

co-expression

protein homology

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Score

B0A49_04549

Pre-mRNA-splicing factor; Involved in mRNA splicing where it associates with cdc5 and the other cwf proteins as part of the spliceosome. (1305 aa)

Predicted Functional Partners:

B0A49_01763

0.991

B0A49_02620

0.985

B0A49_02485

0.984

B0A49_04693

0.979

B0A49_03893

0.979

B0A49_05997

0.970

B0A49_02582

0.970

B0A49_08110

0.969

B0A49_01925

0.969

B0A49_06835

0.965

Your Current Organism:

Cryomyces minteri

NCBI taxonomy Id: 331657
Other names: C. minteri, CBS 116302, CBS 116302 (ex-type); CCFEE 5187, CCFEE 5187

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
B0A49_01763	B0A49_01925	A0A4U0XWS7	A0A4U0XKQ9	Uncharacterized protein.	Uncharacterized protein.	0.966
B0A49_01763	B0A49_02485	A0A4U0XWS7	A0A4U0XTD9	Uncharacterized protein.	Pre-mRNA-processing protein 45.	0.980
B0A49_01763	B0A49_02582	A0A4U0XWS7	A0A4U0XHX5	Uncharacterized protein.	RRM domain-containing protein.	0.991
B0A49_01763	B0A49_02620	A0A4U0XWS7	A0A4U0XLS6	Uncharacterized protein.	Pre-mRNA-splicing factor slt11.	0.977
B0A49_01763	B0A49_03893	A0A4U0XWS7	A0A4U0XKC7	Uncharacterized protein.	Pre-mRNA-splicing factor clf1.	0.973
B0A49_01763	B0A49_04549	A0A4U0XWS7	A0A4U0XDI5	Uncharacterized protein.	Pre-mRNA-splicing factor; Involved in mRNA splicing where it associates with cdc5 and the other cwf proteins as part of the spliceosome.	0.991
B0A49_01763	B0A49_04693	A0A4U0XWS7	A0A4U0XH65	Uncharacterized protein.	Pre-mRNA-splicing factor clf1.	0.973
B0A49_01763	B0A49_05997	A0A4U0XWS7	A0A4U0WPS2	Uncharacterized protein.	RRM domain-containing protein.	0.991
B0A49_01763	B0A49_06835	A0A4U0XWS7	A0A4U0X5E1	Uncharacterized protein.	Pre-mRNA-processing-splicing factor 8.	0.983
B0A49_01763	B0A49_08110	A0A4U0XWS7	A0A4U0WPT4	Uncharacterized protein.	Uncharacterized protein.	0.966
B0A49_01925	B0A49_01763	A0A4U0XKQ9	A0A4U0XWS7	Uncharacterized protein.	Uncharacterized protein.	0.966
B0A49_01925	B0A49_02485	A0A4U0XKQ9	A0A4U0XTD9	Uncharacterized protein.	Pre-mRNA-processing protein 45.	0.991
B0A49_01925	B0A49_02582	A0A4U0XKQ9	A0A4U0XHX5	Uncharacterized protein.	RRM domain-containing protein.	0.954
B0A49_01925	B0A49_02620	A0A4U0XKQ9	A0A4U0XLS6	Uncharacterized protein.	Pre-mRNA-splicing factor slt11.	0.992
B0A49_01925	B0A49_03893	A0A4U0XKQ9	A0A4U0XKC7	Uncharacterized protein.	Pre-mRNA-splicing factor clf1.	0.981
B0A49_01925	B0A49_04549	A0A4U0XKQ9	A0A4U0XDI5	Uncharacterized protein.	Pre-mRNA-splicing factor; Involved in mRNA splicing where it associates with cdc5 and the other cwf proteins as part of the spliceosome.	0.969
B0A49_01925	B0A49_04693	A0A4U0XKQ9	A0A4U0XH65	Uncharacterized protein.	Pre-mRNA-splicing factor clf1.	0.981
B0A49_01925	B0A49_05997	A0A4U0XKQ9	A0A4U0WPS2	Uncharacterized protein.	RRM domain-containing protein.	0.954
B0A49_01925	B0A49_06835	A0A4U0XKQ9	A0A4U0X5E1	Uncharacterized protein.	Pre-mRNA-processing-splicing factor 8.	0.970
B0A49_02485	B0A49_01763	A0A4U0XTD9	A0A4U0XWS7	Pre-mRNA-processing protein 45.	Uncharacterized protein.	0.980

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Network Stats

number of nodes:

11

number of edges:

38

average node degree:

6.91

avg. local clustering coefficient:

0.966

expected number of edges:

21

PPI enrichment p-value:

0.000804

your network has significantly more interactions
than expected (what does that mean?)

Functional enrichments in your networkNote: some enrichments may be expected here (why?)
disable highlight explain columns

Biological Process (Gene Ontology)

GO-term

description

count in network

strength

signal

false discovery rate

GO:0006412

Translation

7 of 107

1.23

1.39

1.72e-05

GO:0010467

Gene expression

9 of 201

1.07

1.21

2.67e-06

GO:0061077

Chaperone-mediated protein folding

2 of 2

2.42

1.18

0.0068

GO:0032978

Protein insertion into membrane from inner side

2 of 2

2.42

1.18

0.0068

GO:0022417

Protein maturation by protein folding

2 of 2

2.42

1.18

0.0068

(more ...)

Molecular Function (Gene Ontology)

GO-term

description

count in network

strength

signal

false discovery rate

GO:0003735

Structural constituent of ribosome

7 of 51

1.55

2.33

1.66e-07

GO:0019843

rRNA binding

4 of 39

1.43

1.1

0.0025

Cellular Component (Gene Ontology)

GO-term

description

count in network

strength

signal

false discovery rate

GO:0005840

Ribosome

7 of 61

1.48

2.2

1.18e-07

Local Network Cluster (STRING)

cluster

description

count in network

strength

signal

false discovery rate

CL:112

Ribosome

7 of 59

1.49

2.14

3.38e-07

CL:115

Ribosome

6 of 52

1.48

2.02

1.08e-06

CL:97

Ribosome, and Ribonucleoside triphosphate biosynthetic process

8 of 102

1.31

1.77

3.38e-07

CL:118

Ribosome

5 of 47

1.44

1.65

2.86e-05

CL:120

rRNA-binding, and Structural constituent of ribosome

4 of 36

1.46

1.37

0.00039

(more ...)

KEGG Pathways

pathway

description

count in network

strength

signal

false discovery rate

dao03010

Ribosome

7 of 53

1.54

2.43

3.53e-08

Subcellular Localization (COMPARTMENTS)

compartment

description

count in network

strength

signal

false discovery rate

GOCC:0005840

Ribosome

7 of 50

1.56

2.44

6.41e-08

GOCC:0044391

Ribosomal subunit

4 of 26

1.6

1.59

0.00019

GOCC:0022626

Cytosolic ribosome

3 of 21

1.57

1.18

0.0025

GOCC:0022627

Cytosolic small ribosomal subunit

2 of 10

1.72

0.82

0.0240

GOCC:0015934

Large ribosomal subunit

2 of 13

1.6

0.73

0.0341

Annotated Keywords (UniProt)

keyword

description

count in network

strength

signal

false discovery rate

KW-0689

Ribosomal protein

7 of 62

1.47

2.14

2.06e-07

KW-0699

rRNA-binding

4 of 37

1.45

1.28

0.00073

Protein Domains (SMART)

domain

description

count in network

strength

signal

false discovery rate

SM00935

Outer membrane protein (OmpH-like)

2 of 2

2.42

1.14

0.0081

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