B0A49_03502 protein (Cryomyces minteri) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

B0A49_03502

ABC transporter domain-containing protein. (1372 aa)

Predicted Functional Partners:

B0A49_03873

0.887

B0A49_02355

0.884

B0A49_08053

0.879

B0A49_00353

0.877

B0A49_09174

0.871

B0A49_05555

0.869

B0A49_01719

0.864

B0A49_01128

0.863

B0A49_11287

0.862

B0A49_07049

0.861

Your Current Organism:

Cryomyces minteri

NCBI taxonomy Id: 331657
Other names: C. minteri, CBS 116302, CBS 116302 (ex-type); CCFEE 5187, CCFEE 5187

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
B0A49_00353	B0A49_01128	A0A4U0XY29	A0A4U0XPB3	40S ribosomal protein S3; Belongs to the universal ribosomal protein uS3 family.	Ribosomal protein S16, mitochondrial.	0.998
B0A49_00353	B0A49_01719	A0A4U0XY29	A0A4U0XQX1	40S ribosomal protein S3; Belongs to the universal ribosomal protein uS3 family.	Uncharacterized protein; Belongs to the universal ribosomal protein uS9 family.	0.998
B0A49_00353	B0A49_02355	A0A4U0XY29	A0A4U0XJU6	40S ribosomal protein S3; Belongs to the universal ribosomal protein uS3 family.	60S ribosomal protein L35.	0.998
B0A49_00353	B0A49_03502	A0A4U0XY29	A0A4U0XJA7	40S ribosomal protein S3; Belongs to the universal ribosomal protein uS3 family.	ABC transporter domain-containing protein.	0.877
B0A49_00353	B0A49_03873	A0A4U0XY29	A0A4V5NIT4	40S ribosomal protein S3; Belongs to the universal ribosomal protein uS3 family.	40S ribosomal protein S23; Belongs to the universal ribosomal protein uS12 family.	0.999
B0A49_00353	B0A49_05555	A0A4U0XY29	A0A4U0XII6	40S ribosomal protein S3; Belongs to the universal ribosomal protein uS3 family.	60S ribosomal protein L26-2.	0.998
B0A49_00353	B0A49_07049	A0A4U0XY29	A0A4V5NF38	40S ribosomal protein S3; Belongs to the universal ribosomal protein uS3 family.	Uncharacterized protein.	0.997
B0A49_00353	B0A49_08053	A0A4U0XY29	A0A4U0WJJ3	40S ribosomal protein S3; Belongs to the universal ribosomal protein uS3 family.	60S ribosomal protein L25.	0.998
B0A49_00353	B0A49_09174	A0A4U0XY29	A0A4U0WJP5	40S ribosomal protein S3; Belongs to the universal ribosomal protein uS3 family.	60S ribosomal protein L7.	0.998
B0A49_00353	B0A49_11287	A0A4U0XY29	A0A4V5NEP9	40S ribosomal protein S3; Belongs to the universal ribosomal protein uS3 family.	Uncharacterized protein.	0.979
B0A49_01128	B0A49_00353	A0A4U0XPB3	A0A4U0XY29	Ribosomal protein S16, mitochondrial.	40S ribosomal protein S3; Belongs to the universal ribosomal protein uS3 family.	0.998
B0A49_01128	B0A49_01719	A0A4U0XPB3	A0A4U0XQX1	Ribosomal protein S16, mitochondrial.	Uncharacterized protein; Belongs to the universal ribosomal protein uS9 family.	0.999
B0A49_01128	B0A49_02355	A0A4U0XPB3	A0A4U0XJU6	Ribosomal protein S16, mitochondrial.	60S ribosomal protein L35.	0.998
B0A49_01128	B0A49_03502	A0A4U0XPB3	A0A4U0XJA7	Ribosomal protein S16, mitochondrial.	ABC transporter domain-containing protein.	0.863
B0A49_01128	B0A49_03873	A0A4U0XPB3	A0A4V5NIT4	Ribosomal protein S16, mitochondrial.	40S ribosomal protein S23; Belongs to the universal ribosomal protein uS12 family.	0.999
B0A49_01128	B0A49_05555	A0A4U0XPB3	A0A4U0XII6	Ribosomal protein S16, mitochondrial.	60S ribosomal protein L26-2.	0.998
B0A49_01128	B0A49_07049	A0A4U0XPB3	A0A4V5NF38	Ribosomal protein S16, mitochondrial.	Uncharacterized protein.	0.998
B0A49_01128	B0A49_08053	A0A4U0XPB3	A0A4U0WJJ3	Ribosomal protein S16, mitochondrial.	60S ribosomal protein L25.	0.998
B0A49_01128	B0A49_09174	A0A4U0XPB3	A0A4U0WJP5	Ribosomal protein S16, mitochondrial.	60S ribosomal protein L7.	0.998
B0A49_01128	B0A49_11287	A0A4U0XPB3	A0A4V5NEP9	Ribosomal protein S16, mitochondrial.	Uncharacterized protein.	0.863