B0A49_02161 protein (Cryomyces minteri) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

B0A49_02161

Uncharacterized protein. (954 aa)

Predicted Functional Partners:

B0A49_00828

0.966

B0A49_08628

0.957

B0A49_12196

0.922

B0A49_13273

0.900

B0A49_12901

0.900

B0A49_11746

0.900

B0A49_04792

0.871

B0A49_06923

0.868

B0A49_04979

0.868

B0A49_02063

0.868

Your Current Organism:

Cryomyces minteri

NCBI taxonomy Id: 331657
Other names: C. minteri, CBS 116302, CBS 116302 (ex-type); CCFEE 5187, CCFEE 5187

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
B0A49_00828	B0A49_02063	A0A4U0XVT8	A0A4U0XPG0	BP28CT domain-containing protein.	Uncharacterized protein.	0.844
B0A49_00828	B0A49_02161	A0A4U0XVT8	A0A4U0XP66	BP28CT domain-containing protein.	Uncharacterized protein.	0.966
B0A49_00828	B0A49_04792	A0A4U0XVT8	A0A4U0X5A4	BP28CT domain-containing protein.	Uncharacterized protein.	0.999
B0A49_00828	B0A49_04979	A0A4U0XVT8	A0A4U0XFF0	BP28CT domain-containing protein.	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.844
B0A49_00828	B0A49_06923	A0A4U0XVT8	A0A4U0WX39	BP28CT domain-containing protein.	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.844
B0A49_00828	B0A49_08628	A0A4U0XVT8	A0A4U0WSF9	BP28CT domain-containing protein.	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.959
B0A49_00828	B0A49_11746	A0A4U0XVT8	A0A4U0WJW0	BP28CT domain-containing protein.	KRR1 small subunit processome component; Required for 40S ribosome biogenesis. Involved in nucleolar processing of pre-18S ribosomal RNA and ribosome assembly.	0.988
B0A49_00828	B0A49_12196	A0A4U0XVT8	A0A4U0WS32	BP28CT domain-containing protein.	ATP-dependent RNA helicase DBP10.	0.944
B0A49_00828	B0A49_12901	A0A4U0XVT8	A0A4U0VWX6	BP28CT domain-containing protein.	KRR1 small subunit processome component; Required for 40S ribosome biogenesis. Involved in nucleolar processing of pre-18S ribosomal RNA and ribosome assembly.	0.988
B0A49_00828	B0A49_13273	A0A4U0XVT8	A0A4U0VL32	BP28CT domain-containing protein.	KRR1 small subunit processome component.	0.988
B0A49_02063	B0A49_00828	A0A4U0XPG0	A0A4U0XVT8	Uncharacterized protein.	BP28CT domain-containing protein.	0.844
B0A49_02063	B0A49_02161	A0A4U0XPG0	A0A4U0XP66	Uncharacterized protein.	Uncharacterized protein.	0.868
B0A49_02063	B0A49_04792	A0A4U0XPG0	A0A4U0X5A4	Uncharacterized protein.	Uncharacterized protein.	0.870
B0A49_02063	B0A49_08628	A0A4U0XPG0	A0A4U0WSF9	Uncharacterized protein.	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.997
B0A49_02063	B0A49_12196	A0A4U0XPG0	A0A4U0WS32	Uncharacterized protein.	ATP-dependent RNA helicase DBP10.	0.808
B0A49_02161	B0A49_00828	A0A4U0XP66	A0A4U0XVT8	Uncharacterized protein.	BP28CT domain-containing protein.	0.966
B0A49_02161	B0A49_02063	A0A4U0XP66	A0A4U0XPG0	Uncharacterized protein.	Uncharacterized protein.	0.868
B0A49_02161	B0A49_04792	A0A4U0XP66	A0A4U0X5A4	Uncharacterized protein.	Uncharacterized protein.	0.871
B0A49_02161	B0A49_04979	A0A4U0XP66	A0A4U0XFF0	Uncharacterized protein.	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.868
B0A49_02161	B0A49_06923	A0A4U0XP66	A0A4U0WX39	Uncharacterized protein.	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.868