B0A49_01908 protein (Cryomyces minteri) - STRING interaction network

Nodes:

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query proteins and first shell of interactors

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second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

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Gene Fusion

Cooccurrence

Coexpression

Experiments

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[Homology]

Score

B0A49_01908

Uncharacterized protein. (894 aa)

Predicted Functional Partners:

B0A49_13956

0.652

B0A49_13778

0.652

B0A49_05649

0.548

B0A49_05718

0.533

B0A49_04008

0.527

B0A49_02764

0.527

B0A49_03736

0.521

B0A49_05181

0.520

B0A49_08292

0.515

B0A49_07840

0.515

Your Current Organism:

Cryomyces minteri

NCBI taxonomy Id: 331657
Other names: C. minteri, CBS 116302, CBS 116302 (ex-type); CCFEE 5187, CCFEE 5187

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
B0A49_01908	B0A49_02764	A0A4U0XRL0	A0A4U0XBP0	Uncharacterized protein.	E3 ubiquitin ligase complex SCF subunit sconC; Belongs to the SKP1 family.	0.527
B0A49_01908	B0A49_03736	A0A4U0XRL0	A0A4U0XV45	Uncharacterized protein.	Uncharacterized protein.	0.521
B0A49_01908	B0A49_04008	A0A4U0XRL0	A0A4U0X749	Uncharacterized protein.	E3 ubiquitin ligase complex SCF subunit sconC; Belongs to the SKP1 family.	0.527
B0A49_01908	B0A49_05181	A0A4U0XRL0	A0A4U0X9F8	Uncharacterized protein.	Tau95 domain-containing protein.	0.520
B0A49_01908	B0A49_05649	A0A4U0XRL0	A0A4U0WFH7	Uncharacterized protein.	Ubiquitin-like domain-containing protein.	0.548
B0A49_01908	B0A49_05718	A0A4U0XRL0	A0A4V5NG66	Uncharacterized protein.	SUMO-conjugating enzyme ubc9; Belongs to the ubiquitin-conjugating enzyme family.	0.533
B0A49_01908	B0A49_07840	A0A4U0XRL0	A0A4U0WSG1	Uncharacterized protein.	Putative urea carboxylase.	0.515
B0A49_01908	B0A49_08292	A0A4U0XRL0	A0A4U0WMA4	Uncharacterized protein.	Amidase domain-containing protein.	0.515
B0A49_01908	B0A49_13778	A0A4U0XRL0	A0A4U0UU89	Uncharacterized protein.	ANK_REP_REGION domain-containing protein.	0.652
B0A49_01908	B0A49_13956	A0A4U0XRL0	A0A4U0UNW5	Uncharacterized protein.	ANK_REP_REGION domain-containing protein.	0.652
B0A49_02764	B0A49_01908	A0A4U0XBP0	A0A4U0XRL0	E3 ubiquitin ligase complex SCF subunit sconC; Belongs to the SKP1 family.	Uncharacterized protein.	0.527
B0A49_02764	B0A49_05649	A0A4U0XBP0	A0A4U0WFH7	E3 ubiquitin ligase complex SCF subunit sconC; Belongs to the SKP1 family.	Ubiquitin-like domain-containing protein.	0.644
B0A49_02764	B0A49_05718	A0A4U0XBP0	A0A4V5NG66	E3 ubiquitin ligase complex SCF subunit sconC; Belongs to the SKP1 family.	SUMO-conjugating enzyme ubc9; Belongs to the ubiquitin-conjugating enzyme family.	0.733
B0A49_02764	B0A49_13778	A0A4U0XBP0	A0A4U0UU89	E3 ubiquitin ligase complex SCF subunit sconC; Belongs to the SKP1 family.	ANK_REP_REGION domain-containing protein.	0.869
B0A49_02764	B0A49_13956	A0A4U0XBP0	A0A4U0UNW5	E3 ubiquitin ligase complex SCF subunit sconC; Belongs to the SKP1 family.	ANK_REP_REGION domain-containing protein.	0.869
B0A49_03736	B0A49_01908	A0A4U0XV45	A0A4U0XRL0	Uncharacterized protein.	Uncharacterized protein.	0.521
B0A49_03736	B0A49_05181	A0A4U0XV45	A0A4U0X9F8	Uncharacterized protein.	Tau95 domain-containing protein.	0.997
B0A49_04008	B0A49_01908	A0A4U0X749	A0A4U0XRL0	E3 ubiquitin ligase complex SCF subunit sconC; Belongs to the SKP1 family.	Uncharacterized protein.	0.527
B0A49_04008	B0A49_05649	A0A4U0X749	A0A4U0WFH7	E3 ubiquitin ligase complex SCF subunit sconC; Belongs to the SKP1 family.	Ubiquitin-like domain-containing protein.	0.644
B0A49_04008	B0A49_05718	A0A4U0X749	A0A4V5NG66	E3 ubiquitin ligase complex SCF subunit sconC; Belongs to the SKP1 family.	SUMO-conjugating enzyme ubc9; Belongs to the ubiquitin-conjugating enzyme family.	0.733

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Network Stats

number of nodes:

11

number of edges:

38

average node degree:

6.91

avg. local clustering coefficient:

0.966

expected number of edges:

21

PPI enrichment p-value:

0.000804

your network has significantly more interactions
than expected (what does that mean?)

Functional enrichments in your networkNote: some enrichments may be expected here (why?)
disable highlight explain columns

Biological Process (Gene Ontology)

GO-term

description

count in network

strength

signal

false discovery rate

GO:0006412

Translation

7 of 107

1.23

1.39

1.72e-05

GO:0010467

Gene expression

9 of 201

1.07

1.21

2.67e-06

GO:0061077

Chaperone-mediated protein folding

2 of 2

2.42

1.18

0.0068

GO:0032978

Protein insertion into membrane from inner side

2 of 2

2.42

1.18

0.0068

GO:0022417

Protein maturation by protein folding

2 of 2

2.42

1.18

0.0068

(more ...)

Molecular Function (Gene Ontology)

GO-term

description

count in network

strength

signal

false discovery rate

GO:0003735

Structural constituent of ribosome

7 of 51

1.55

2.33

1.66e-07

GO:0019843

rRNA binding

4 of 39

1.43

1.1

0.0025

Cellular Component (Gene Ontology)

GO-term

description

count in network

strength

signal

false discovery rate

GO:0005840

Ribosome

7 of 61

1.48

2.2

1.18e-07

Local Network Cluster (STRING)

cluster

description

count in network

strength

signal

false discovery rate

CL:112

Ribosome

7 of 59

1.49

2.14

3.38e-07

CL:115

Ribosome

6 of 52

1.48

2.02

1.08e-06

CL:97

Ribosome, and Ribonucleoside triphosphate biosynthetic process

8 of 102

1.31

1.77

3.38e-07

CL:118

Ribosome

5 of 47

1.44

1.65

2.86e-05

CL:120

rRNA-binding, and Structural constituent of ribosome

4 of 36

1.46

1.37

0.00039

(more ...)

KEGG Pathways

pathway

description

count in network

strength

signal

false discovery rate

dao03010

Ribosome

7 of 53

1.54

2.43

3.53e-08

Subcellular Localization (COMPARTMENTS)

compartment

description

count in network

strength

signal

false discovery rate

GOCC:0005840

Ribosome

7 of 50

1.56

2.44

6.41e-08

GOCC:0044391

Ribosomal subunit

4 of 26

1.6

1.59

0.00019

GOCC:0022626

Cytosolic ribosome

3 of 21

1.57

1.18

0.0025

GOCC:0022627

Cytosolic small ribosomal subunit

2 of 10

1.72

0.82

0.0240

GOCC:0015934

Large ribosomal subunit

2 of 13

1.6

0.73

0.0341

Annotated Keywords (UniProt)

keyword

description

count in network

strength

signal

false discovery rate

KW-0689

Ribosomal protein

7 of 62

1.47

2.14

2.06e-07

KW-0699

rRNA-binding

4 of 37

1.45

1.28

0.00073

Protein Domains (SMART)

domain

description

count in network

strength

signal

false discovery rate

SM00935

Outer membrane protein (OmpH-like)

2 of 2

2.42

1.14

0.0081

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