Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ACE03116.1KEGG: plt:Plut_1918 hypothetical protein. (69 aa)    
Predicted Functional Partners:
ACE03687.1
PFAM: PemK family protein; KEGG: plt:Plut_1919 transcriptional modulator of MazE/toxin, MazF.
 
   
 0.797
ACE03117.1
KEGG: ppd:Ppro_0140 transposase, IS4 family protein.
       0.773
ACE03119.1
KEGG: plt:Plut_0979 hypothetical protein.
  
     0.492
ACE03757.1
PFAM: plasmid stabilization system; KEGG: plt:Plut_0980 putative protein of the plasmid stabilization system.
  
     0.448
ACE03115.1
KEGG: cch:Cag_1130 hypothetical protein.
       0.443
ACE03756.1
KEGG: plt:Plut_0979 hypothetical protein.
  
     0.437
Your Current Organism:
Chlorobium phaeobacteroides BS1
NCBI taxonomy Id: 331678
Other names: C. phaeobacteroides BS1, Chlorobium phaeobacteroides MN1, Chlorobium phaeobacteroides str. BS1, Chlorobium phaeobacteroides strain BS1
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