STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ACE03188.1KEGG: pdi:BDI_2985 putative excisionase. (98 aa)    
Predicted Functional Partners:
ACE03184.1
PFAM: integrase family protein; KEGG: spc:Sputcn32_4000 phage integrase family protein; Belongs to the 'phage' integrase family.
 
     0.836
ACE03190.1
TIGRFAM: phage/plasmid primase, P4 family; PFAM: primase P4; KEGG: fps:FP0387 hypothetical protein.
 
     0.807
ACE03189.1
Hypothetical protein.
       0.773
ACE03634.1
PFAM: integrase family protein; KEGG: bfs:BF1685 putative bacteriophage integrase; Belongs to the 'phage' integrase family.
 
   
 0.718
ACE03187.1
Hypothetical protein.
       0.508
ACE04315.1
KEGG: cte:CT1058 aminoacyl-histidine dipeptidase; TIGRFAM: aminoacyl-histidine dipeptidase; PFAM: peptidase M20; peptidase dimerisation domain protein.
  
     0.463
ACE05372.1
PFAM: PGAP1 family protein; KEGG: nfa:nfa28820 hypothetical protein.
  
     0.448
ACE03185.1
Hypothetical protein.
       0.408
ACE03186.1
KEGG: son:SO_4046 hypothetical protein.
       0.408
ACE05073.1
TIGRFAM: transcriptional regulator, y4mF family; PFAM: helix-turn-helix domain protein; KEGG: pvi:Cvib_0662 putative transcriptional regulator, XRE family.
  
     0.403
Your Current Organism:
Chlorobium phaeobacteroides BS1
NCBI taxonomy Id: 331678
Other names: C. phaeobacteroides BS1, Chlorobium phaeobacteroides MN1, Chlorobium phaeobacteroides str. BS1, Chlorobium phaeobacteroides strain BS1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.