Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
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Co-occurrence
Co-expression
Experiments
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[Homology]
Score
ACE03192.1TIGRFAM: phage terminase, small subunit, P27 family; PFAM: terminase small subunit putative P27; KEGG: sgl:SG0725 hypothetical protein. (166 aa)    
Predicted Functional Partners:
ACE03193.1
Hypothetical protein.
       0.773
ACE03191.1
Hypothetical protein.
       0.538
ACE04283.1
PFAM: RNA-directed DNA polymerase (Reverse transcriptase); Group II intron maturase-specific domain protein; KEGG: plt:Plut_1820 RNA-directed DNA polymerase.
  
    0.464
ACE03150.1
PFAM: HNH endonuclease; SMART: HNH nuclease; KEGG: pvi:Cvib_0193 HNH endonuclease.
  
    0.418
ACE04094.1
PFAM: HNH endonuclease; protein of unknown function DUF262; SMART: HNH nuclease; KEGG: cha:CHAB381_0063 hypothetical protein.
  
    0.418
Your Current Organism:
Chlorobium phaeobacteroides BS1
NCBI taxonomy Id: 331678
Other names: C. phaeobacteroides BS1, Chlorobium phaeobacteroides MN1, Chlorobium phaeobacteroides str. BS1, Chlorobium phaeobacteroides strain BS1
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