STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ACE03225.1PFAM: pentapeptide repeat protein; KEGG: plt:Plut_2015 pentapeptide repeat family protein. (442 aa)    
Predicted Functional Partners:
ACE03226.1
PFAM: protein of unknown function DUF6 transmembrane; KEGG: aoe:Clos_0259 protein of unknown function DUF6 transmembrane.
  
    0.601
ACE04004.1
PFAM: pentapeptide repeat protein; KEGG: cch:Cag_1295 MCBG protein (microcin resistance protein)-like.
  
     0.531
ACE03227.1
PFAM: NAD-dependent epimerase/dehydratase; NmrA family protein; KEGG: cte:CT2065 hypothetical protein.
 
    0.513
ACE03224.1
KEGG: pvi:Cvib_1657 hypothetical protein.
       0.477
ACE04427.1
PFAM: alpha/beta hydrolase fold; KEGG: gvi:gll1310 hypothetical protein.
  
     0.429
ACE03397.1
KEGG: plt:Plut_1752 hypothetical protein.
 
 
 0.427
gyrB
DNA gyrase, B subunit; A type II topoisomerase that negatively supercoils closed circular double-stranded (ds) DNA in an ATP-dependent manner to modulate DNA topology and maintain chromosomes in an underwound state. Negative supercoiling favors strand separation, and DNA replication, transcription, recombination and repair, all of which involve strand separation. Also able to catalyze the interconversion of other topological isomers of dsDNA rings, including catenanes and knotted rings. Type II topoisomerases break and join 2 DNA strands simultaneously in an ATP-dependent manner.
   
 
 0.421
Your Current Organism:
Chlorobium phaeobacteroides BS1
NCBI taxonomy Id: 331678
Other names: C. phaeobacteroides BS1, Chlorobium phaeobacteroides MN1, Chlorobium phaeobacteroides str. BS1, Chlorobium phaeobacteroides strain BS1
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