Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
ACE03225.1PFAM: pentapeptide repeat protein; KEGG: plt:Plut_2015 pentapeptide repeat family protein. (442 aa)    
Predicted Functional Partners:
ACE03226.1
PFAM: protein of unknown function DUF6 transmembrane; KEGG: aoe:Clos_0259 protein of unknown function DUF6 transmembrane.
   
 
 0.659
ACE04004.1
PFAM: pentapeptide repeat protein; KEGG: cch:Cag_1295 MCBG protein (microcin resistance protein)-like.
  
     0.531
ACE03224.1
KEGG: pvi:Cvib_1657 hypothetical protein.
       0.486
ACE03227.1
PFAM: NAD-dependent epimerase/dehydratase; NmrA family protein; KEGG: cte:CT2065 hypothetical protein.
 
    0.482
ACE04427.1
PFAM: alpha/beta hydrolase fold; KEGG: gvi:gll1310 hypothetical protein.
  
     0.429
ACE05123.1
PFAM: WD-40 repeat protein; KEGG: cte:CT1986 WD-repeat family protein.
 
  
  0.404
Your Current Organism:
Chlorobium phaeobacteroides BS1
NCBI taxonomy Id: 331678
Other names: C. phaeobacteroides BS1, Chlorobium phaeobacteroides MN1, Chlorobium phaeobacteroides str. BS1, Chlorobium phaeobacteroides strain BS1
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