Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
ACE03304.1KEGG: gsu:GSU1360 hypothetical protein. (591 aa)    
Predicted Functional Partners:
ACE03305.1
KEGG: gsu:GSU1361 Piwi domain protein.
 
     0.946
ACE03302.1
PFAM: N-6 DNA methylase; KEGG: ava:Ava_1159 N-6 DNA methylase.
       0.774
ACE03303.1
PFAM: restriction modification system DNA specificity domain; KEGG: pab:PAB2150 type I restriction-modification enzyme, S subunit.
       0.773
ACE03306.1
Type I site-specific deoxyribonuclease, HsdR family; Subunit R is required for both nuclease and ATPase activities, but not for modification.
       0.741
ACE03307.1
PFAM: protein of unknown function DUF45; KEGG: ava:Ava_1155 metal-dependent hydrolase-like.
       0.737
ACE04408.1
PFAM: nuclear protein SET; KEGG: cte:CT0952 hypothetical protein.
    
 0.651
ACE03301.1
PFAM: short-chain dehydrogenase/reductase SDR; KEGG: cte:CT1895 hypothetical protein; Belongs to the short-chain dehydrogenases/reductases (SDR) family.
   
  0.604
ACE03978.1
KEGG: xcb:XC_0351 hypothetical protein.
   
   0.583
ACE04070.1
KEGG: dvl:Dvul_1922 hypothetical protein.
  
  
  0.562
atpD
ATP synthase F1, beta subunit; Produces ATP from ADP in the presence of a proton gradient across the membrane. The catalytic sites are hosted primarily by the beta subunits; Belongs to the ATPase alpha/beta chains family.
    
 0.535
Your Current Organism:
Chlorobium phaeobacteroides BS1
NCBI taxonomy Id: 331678
Other names: C. phaeobacteroides BS1, Chlorobium phaeobacteroides MN1, Chlorobium phaeobacteroides str. BS1, Chlorobium phaeobacteroides strain BS1
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