Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
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empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
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from curated databases
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experimentally determined
co-expression
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gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
fniIsopentenyl-diphosphate delta-isomerase, type 2; Involved in the biosynthesis of isoprenoids. Catalyzes the 1,3-allylic rearrangement of the homoallylic substrate isopentenyl (IPP) to its allylic isomer, dimethylallyl diphosphate (DMAPP). (357 aa)    
Predicted Functional Partners:
ACE03381.1
PFAM: Polyprenyl synthetase; KEGG: pvi:Cvib_1546 geranyltranstransferase; Belongs to the FPP/GGPP synthase family.
 
 
 0.986
ispH
4-hydroxy-3-methylbut-2-enyl diphosphate reductase; Catalyzes the conversion of 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate (HMBPP) into a mixture of isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP). Acts in the terminal step of the DOXP/MEP pathway for isoprenoid precursor biosynthesis. Belongs to the IspH family.
    
 0.918
ACE03380.1
TIGRFAM: DNA protecting protein DprA; PFAM: SMF family protein; KEGG: cte:CT0255 DprA/SMF protein, putative DNA processing factor.
       0.789
ACE04195.1
FAD linked oxidase domain protein; PFAM: protein of unknown function DUF224 cysteine-rich region domain protein; FAD linked oxidase domain protein; KEGG: plt:Plut_1235 oxidoreductase, FAD-binding.
  
 0.683
ACE03383.1
PFAM: protein of unknown function DUF214; KEGG: cch:Cag_0371 putative ABC transporter, integral membrane protein.
       0.540
ACE03925.1
PFAM: NUDIX hydrolase; KEGG: plt:Plut_1344 hypothetical protein.
  
 
  0.505
guaA
GMP synthase, large subunit; Catalyzes the synthesis of GMP from XMP.
  
  
 0.486
ACE04724.1
D-lactate dehydrogenase (cytochrome); PFAM: FAD linked oxidase domain protein; KEGG: cte:CT0565 oxidoreductase, FAD-binding.
  
 0.447
ACE03379.1
PFAM: outer membrane chaperone Skp (OmpH); KEGG: pvi:Cvib_1549 outer membrane chaperone Skp (OmpH).
       0.442
ACE03850.1
Protease Do; KEGG: plt:Plut_1467 peptidase S1C, Do; TIGRFAM: protease Do; PFAM: peptidase S1 and S6 chymotrypsin/Hap; PDZ/DHR/GLGF domain protein.
     
  0.426
Your Current Organism:
Chlorobium phaeobacteroides BS1
NCBI taxonomy Id: 331678
Other names: C. phaeobacteroides BS1, Chlorobium phaeobacteroides MN1, Chlorobium phaeobacteroides str. BS1, Chlorobium phaeobacteroides strain BS1
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