STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
xerCIntegrase family protein; Site-specific tyrosine recombinase, which acts by catalyzing the cutting and rejoining of the recombining DNA molecules. The XerC- XerD complex is essential to convert dimers of the bacterial chromosome into monomers to permit their segregation at cell division. It also contributes to the segregational stability of plasmids. (330 aa)    
Predicted Functional Partners:
ACE03539.1
PFAM: Methyltransferase type 11; Methyltransferase type 12; KEGG: plt:Plut_1626 hypothetical protein.
       0.781
ACE03540.1
KEGG: cte:CT1636 hypothetical protein.
       0.781
ACE04929.1
PFAM: cell divisionFtsK/SpoIIIE; KEGG: pvi:Cvib_0452 cell divisionFtsK/SpoIIIE.
  
   
 0.674
ACE03184.1
PFAM: integrase family protein; KEGG: spc:Sputcn32_4000 phage integrase family protein; Belongs to the 'phage' integrase family.
 
 
 
 0.612
ACE03542.1
TIGRFAM: ribosomal subunit interface protein; PFAM: sigma 54 modulation protein/ribosomal protein S30EA; KEGG: cch:Cag_1763 hypothetical protein.
  
    0.592
queF
7-cyano-7-deazaguanine reductase; Catalyzes the NADPH-dependent reduction of 7-cyano-7- deazaguanine (preQ0) to 7-aminomethyl-7-deazaguanine (preQ1). Belongs to the GTP cyclohydrolase I family. QueF type 1 subfamily.
       0.512
ACE03544.1
PFAM: extracellular solute-binding protein family 5; KEGG: cte:CT1632 peptide ABC transporter, periplasmic peptide-binding protein.
 
     0.510
ACE04995.1
TIGRFAM: parB-like partition protein; PFAM: ParB domain protein nuclease; KEGG: pvi:Cvib_0389 chromosome segregation DNA-binding protein; Belongs to the ParB family.
  
  
 0.489
ACE05145.1
KEGG: pvi:Cvib_0292 phosphoribosyltransferase.
   
    0.478
mfd
Transcription-repair coupling factor; Couples transcription and DNA repair by recognizing RNA polymerase (RNAP) stalled at DNA lesions. Mediates ATP-dependent release of RNAP and its truncated transcript from the DNA, and recruitment of nucleotide excision repair machinery to the damaged site; In the C-terminal section; belongs to the helicase family. RecG subfamily.
  
   
 0.466
Your Current Organism:
Chlorobium phaeobacteroides BS1
NCBI taxonomy Id: 331678
Other names: C. phaeobacteroides BS1, Chlorobium phaeobacteroides MN1, Chlorobium phaeobacteroides str. BS1, Chlorobium phaeobacteroides strain BS1
Server load: low (40%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.