STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ACE03542.1TIGRFAM: ribosomal subunit interface protein; PFAM: sigma 54 modulation protein/ribosomal protein S30EA; KEGG: cch:Cag_1763 hypothetical protein. (109 aa)    
Predicted Functional Partners:
rpsU
PFAM: ribosomal protein S21; KEGG: plt:Plut_0283 30S ribosomal protein S21; Belongs to the bacterial ribosomal protein bS21 family.
 
 
 
 0.905
rpmG
PFAM: ribosomal protein L33; KEGG: cte:CT1373 50S ribosomal protein L33; Belongs to the bacterial ribosomal protein bL33 family.
 
 
   0.886
rplQ
PFAM: ribosomal protein L17; KEGG: pvi:Cvib_0274 50S ribosomal protein L17.
 
 
   0.885
rpsF
Ribosomal protein S6; Binds together with S18 to 16S ribosomal RNA.
  
 
   0.874
rpsI
PFAM: ribosomal protein S9; KEGG: cch:Cag_1649 30S ribosomal protein S9; Belongs to the universal ribosomal protein uS9 family.
   
 
 0.873
rpmA
PFAM: ribosomal protein L27; KEGG: cte:CT1506 50S ribosomal protein L27; Belongs to the bacterial ribosomal protein bL27 family.
   
 
 0.872
rpmH
PFAM: ribosomal protein L34; KEGG: cch:Cag_2033 50S ribosomal protein L34; Belongs to the bacterial ribosomal protein bL34 family.
   
 
 0.872
rpmC
PFAM: ribosomal protein L29; KEGG: plt:Plut_0189 50S ribosomal protein L29; Belongs to the universal ribosomal protein uL29 family.
    
 
 0.871
rpsT
Ribosomal protein S20; Binds directly to 16S ribosomal RNA.
  
 
   0.870
rpsP
PFAM: ribosomal protein S16; KEGG: cte:CT1166 ribosomal protein S16; Belongs to the bacterial ribosomal protein bS16 family.
    
 
 0.870
Your Current Organism:
Chlorobium phaeobacteroides BS1
NCBI taxonomy Id: 331678
Other names: C. phaeobacteroides BS1, Chlorobium phaeobacteroides MN1, Chlorobium phaeobacteroides str. BS1, Chlorobium phaeobacteroides strain BS1
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