STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ACE03609.1PFAM: pentapeptide repeat protein; KEGG: amr:AM1_1834 pentapeptide repeat protein. (300 aa)    
Predicted Functional Partners:
ACE03608.1
Hypothetical protein; KEGG: scl:sce2897 conserved putative secreted protein.
  
    0.776
ACE04004.1
PFAM: pentapeptide repeat protein; KEGG: cch:Cag_1295 MCBG protein (microcin resistance protein)-like.
  
     0.547
ACE03607.1
KEGG: plt:Plut_1857 hypothetical protein.
       0.514
ACE04427.1
PFAM: alpha/beta hydrolase fold; KEGG: gvi:gll1310 hypothetical protein.
  
     0.494
ACE03610.1
KEGG: cte:CT1560 hypothetical protein.
       0.430
ACE03611.1
PFAM: cytochrome c assembly protein; KEGG: cte:CT1559 cytochrome c biogenesis protein.
       0.430
gyrB
DNA gyrase, B subunit; A type II topoisomerase that negatively supercoils closed circular double-stranded (ds) DNA in an ATP-dependent manner to modulate DNA topology and maintain chromosomes in an underwound state. Negative supercoiling favors strand separation, and DNA replication, transcription, recombination and repair, all of which involve strand separation. Also able to catalyze the interconversion of other topological isomers of dsDNA rings, including catenanes and knotted rings. Type II topoisomerases break and join 2 DNA strands simultaneously in an ATP-dependent manner.
   
 
 0.421
Your Current Organism:
Chlorobium phaeobacteroides BS1
NCBI taxonomy Id: 331678
Other names: C. phaeobacteroides BS1, Chlorobium phaeobacteroides MN1, Chlorobium phaeobacteroides str. BS1, Chlorobium phaeobacteroides strain BS1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.