STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ACE03638.1TIGRFAM: DNA binding domain protein, excisionase family; PFAM: regulatory protein MerR; KEGG: chu:CHU_1463 excisionase. (116 aa)    
Predicted Functional Partners:
ACE03649.1
KEGG: pgi:PG0872 mobilizable transposon, xis protein.
  
     0.767
ACE03642.1
KEGG: nar:Saro_0362 conjugal transfer protein precursor.
       0.545
ACE03639.1
PFAM: Cobyrinic acid ac-diamide synthase; KEGG: swi:Swit_5120 cobyrinic acid a,c-diamide synthase.
       0.540
ACE03640.1
KEGG: met:M446_6985 hypothetical protein.
       0.538
ACE03641.1
Hypothetical protein.
       0.538
ACE03184.1
PFAM: integrase family protein; KEGG: spc:Sputcn32_4000 phage integrase family protein; Belongs to the 'phage' integrase family.
 
     0.534
ACE03190.1
TIGRFAM: phage/plasmid primase, P4 family; PFAM: primase P4; KEGG: fps:FP0387 hypothetical protein.
 
     0.509
ACE03634.1
PFAM: integrase family protein; KEGG: bfs:BF1685 putative bacteriophage integrase; Belongs to the 'phage' integrase family.
 
   
 0.492
rpsU
PFAM: ribosomal protein S21; KEGG: plt:Plut_0283 30S ribosomal protein S21; Belongs to the bacterial ribosomal protein bS21 family.
  
    0.458
Your Current Organism:
Chlorobium phaeobacteroides BS1
NCBI taxonomy Id: 331678
Other names: C. phaeobacteroides BS1, Chlorobium phaeobacteroides MN1, Chlorobium phaeobacteroides str. BS1, Chlorobium phaeobacteroides strain BS1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.