Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ACE03663.1PFAM: protein of unknown function DUF1016; KEGG: mac:MA2994 hypothetical protein. (389 aa)    
Predicted Functional Partners:
ACE03664.1
PFAM: type III restriction protein res subunit; KEGG: eba:ebA675 conserved hypothetical protein, potential type III restriction enzyme.
       0.780
ACE03665.1
KEGG: sat:SYN_01823 hypothetical cytosolic protein.
       0.773
ACE03666.1
PFAM: protein of unknown function DUF87; KEGG: sat:SYN_01822 ATPase.
       0.773
Your Current Organism:
Chlorobium phaeobacteroides BS1
NCBI taxonomy Id: 331678
Other names: C. phaeobacteroides BS1, Chlorobium phaeobacteroides MN1, Chlorobium phaeobacteroides str. BS1, Chlorobium phaeobacteroides strain BS1
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