Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Neighborhood
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Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
ACE03832.1KEGG: rrs:RoseRS_2538 hypothetical protein. (1290 aa)    
Predicted Functional Partners:
rsmI
Uroporphyrin-III C/tetrapyrrole (Corrin/Porphyrin) methyltransferase; Catalyzes the 2'-O-methylation of the ribose of cytidine 1402 (C1402) in 16S rRNA.
  
  
 0.540
ACE04343.1
PFAM: helicase domain protein; KEGG: sgr:SGR_4668 putative DNA helicase.
 
   
 0.504
ACE04856.1
PFAM: Excinuclease ABC C subunit domain protein; KEGG: chu:CHU_0210 hypothetical protein.
  
  
 0.439
ACE04895.1
PFAM: Excinuclease ABC C subunit domain protein; KEGG: mmr:Mmar10_2352 excinuclease ABC, C subunit domain protein.
  
  
 0.439
Your Current Organism:
Chlorobium phaeobacteroides BS1
NCBI taxonomy Id: 331678
Other names: C. phaeobacteroides BS1, Chlorobium phaeobacteroides MN1, Chlorobium phaeobacteroides str. BS1, Chlorobium phaeobacteroides strain BS1
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