Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ACE03917.1PFAM: protein of unknown function DUF164; KEGG: cch:Cag_1111 hypothetical protein. (268 aa)    
Predicted Functional Partners:
ACE03728.1
KEGG: cte:CT0523 hypothetical protein.
  
     0.758
ACE03334.1
KEGG: plt:Plut_1902 hypothetical protein.
  
     0.756
ACE04209.1
KEGG: cch:Cag_0822 hypothetical protein.
 
     0.750
ACE04368.1
KEGG: cte:CT1194 hypothetical protein.
 
     0.749
ACE03500.1
PFAM: surface antigen (D15); surface antigen variable number repeat protein; KEGG: plt:Plut_1648 hypothetical protein.
  
     0.739
ACE04695.1
SMART: Tetratricopeptide domain protein; KEGG: cte:CT1812 hypothetical protein.
  
     0.739
ACE03501.1
KEGG: plt:Plut_1647 hypothetical protein.
  
     0.730
ACE03442.1
KEGG: cte:CT0480 hypothetical protein.
  
     0.704
ACE05152.1
KEGG: cte:CT2013 hypothetical protein.
  
     0.695
ACE03404.1
PFAM: polysaccharide biosynthesis protein; KEGG: pvi:Cvib_1526 polysaccharide biosynthesis protein.
  
     0.689
Your Current Organism:
Chlorobium phaeobacteroides BS1
NCBI taxonomy Id: 331678
Other names: C. phaeobacteroides BS1, Chlorobium phaeobacteroides MN1, Chlorobium phaeobacteroides str. BS1, Chlorobium phaeobacteroides strain BS1
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