Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ACE03944.1TIGRFAM: efflux transporter, RND family, MFP subunit; PFAM: secretion protein HlyD family protein; KEGG: cch:Cag_0987 secretion protein HlyD; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family. (424 aa)    
Predicted Functional Partners:
ACE03942.1
PFAM: protein of unknown function DUF214; KEGG: pvi:Cvib_0717 protein of unknown function DUF214.
 
  
 0.953
ACE03943.1
ABC transporter-related protein; PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: cte:CT1349 ABC transporter, ATP-binding protein.
 
  
 0.951
ACE04537.1
PFAM: outer membrane efflux protein; KEGG: plt:Plut_0733 outer membrane efflux protein, putative.
 
 0.949
ACE04554.1
PFAM: outer membrane efflux protein; KEGG: pvi:Cvib_1116 outer membrane efflux protein.
 
 0.945
ACE03941.1
PFAM: protein of unknown function DUF214; KEGG: pvi:Cvib_0716 protein of unknown function DUF214.
 
  
 0.928
ACE03247.1
PFAM: outer membrane efflux protein; KEGG: cch:Cag_0122 LipD protein, putative.
 
 0.918
ACE04584.1
TIGRFAM: type I secretion outer membrane protein, TolC family; PFAM: outer membrane efflux protein; KEGG: azo:azo0654 putative outer membrane efflux protein.
  
 0.907
ACE03431.1
TIGRFAM: efflux transporter, RND family, MFP subunit; PFAM: secretion protein HlyD family protein; KEGG: cte:CT0464 membrane fusion protein, putative; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.
 
  
0.863
ACE04556.1
TIGRFAM: efflux transporter, RND family, MFP subunit; KEGG: plt:Plut_0708 secretion protein HlyD.
 
  
 0.844
ACE03248.1
KEGG: pvi:Cvib_1643 hypothetical protein.
    
 0.810
Your Current Organism:
Chlorobium phaeobacteroides BS1
NCBI taxonomy Id: 331678
Other names: C. phaeobacteroides BS1, Chlorobium phaeobacteroides MN1, Chlorobium phaeobacteroides str. BS1, Chlorobium phaeobacteroides strain BS1
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