Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ACE04004.1PFAM: pentapeptide repeat protein; KEGG: cch:Cag_1295 MCBG protein (microcin resistance protein)-like. (193 aa)    
Predicted Functional Partners:
ACE03609.1
PFAM: pentapeptide repeat protein; KEGG: amr:AM1_1834 pentapeptide repeat protein.
  
     0.547
ACE03225.1
PFAM: pentapeptide repeat protein; KEGG: plt:Plut_2015 pentapeptide repeat family protein.
  
     0.531
ACE05016.1
PFAM: domain of unknown function DUF1745; KEGG: ana:alr4881 unknown protein.
  
    0.476
ACE04462.1
PFAM: phytase; KEGG: fjo:Fjoh_1367 phytase.
  
     0.424
ACE04003.1
Type II site-specific deoxyribonuclease.
       0.405
Your Current Organism:
Chlorobium phaeobacteroides BS1
NCBI taxonomy Id: 331678
Other names: C. phaeobacteroides BS1, Chlorobium phaeobacteroides MN1, Chlorobium phaeobacteroides str. BS1, Chlorobium phaeobacteroides strain BS1
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