Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
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empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
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gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
ACE04109.1TIGRFAM: methylmalonyl-CoA epimerase; PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: cch:Cag_1126 hypothetical protein. (134 aa)    
Predicted Functional Partners:
ACE04107.1
methylmalonyl-CoA mutase, large subunit; KEGG: cch:Cag_1223 methylmalonyl-CoA mutase; TIGRFAM: methylmalonyl-CoA mutase, large subunit; PFAM: methylmalonyl-CoA mutase; cobalamin B12-binding domain protein.
 
  
 0.995
ACE04106.1
TIGRFAM: LAO/AO transport system ATPase; PFAM: ArgK protein; KEGG: cch:Cag_1237 arginine/ornithine transport system ATPase.
     0.961
ACE04110.1
PFAM: AMP-dependent synthetase and ligase; KEGG: cch:Cag_1125 propionate--CoA ligase.
  
  
 0.810
ACE04108.1
KEGG: cch:Cag_1127 acetyl-CoA carboxylase alpha subunit-like.
  
    0.761
ACE05255.1
PFAM: Bile acid:sodium symporter; KEGG: mvn:Mevan_1540 bile acid:sodium symporter.
   
 
  0.692
ACE03744.1
PFAM: transcriptional coactivator/pterin dehydratase; KEGG: psp:PSPPH_3532 pterin-4-alpha-carbinolamine dehydratase.
  
  
 0.526
ACE03548.1
PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; pyruvate ferredoxin/flavodoxin oxidoreductase; pyruvate flavodoxin/ferredoxin oxidoreductase domain protein; KEGG: cch:Cag_1730 pyruvate:ferredoxin (flavodoxin) oxidoreductase.
     
 0.509
rsmA
Dimethyladenosine transferase; Specifically dimethylates two adjacent adenosines (A1518 and A1519) in the loop of a conserved hairpin near the 3'-end of 16S rRNA in the 30S particle. May play a critical role in biogenesis of 30S subunits.
       0.463
Your Current Organism:
Chlorobium phaeobacteroides BS1
NCBI taxonomy Id: 331678
Other names: C. phaeobacteroides BS1, Chlorobium phaeobacteroides MN1, Chlorobium phaeobacteroides str. BS1, Chlorobium phaeobacteroides strain BS1
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