Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
ACE04173.1PFAM: pentapeptide repeat protein; KEGG: pvi:Cvib_0989 pentapeptide repeat protein. (412 aa)    
Predicted Functional Partners:
ACE04171.1
KEGG: pvi:Cvib_0991 hypothetical protein.
       0.780
ACE04172.1
KEGG: plt:Plut_1238 hypothetical protein.
       0.780
ACE04174.1
PFAM: glycosyl transferase family 2; KEGG: pvi:Cvib_0988 glycosyl transferase, family 2.
  
    0.515
ACE04170.1
Phosphate uptake regulator, PhoU; PFAM: PhoU family protein; KEGG: cte:CT0903 transcriptional regulator, putative.
       0.475
ACE05123.1
PFAM: WD-40 repeat protein; KEGG: cte:CT1986 WD-repeat family protein.
 
  
  0.448
ACE04427.1
PFAM: alpha/beta hydrolase fold; KEGG: gvi:gll1310 hypothetical protein.
  
     0.416
Your Current Organism:
Chlorobium phaeobacteroides BS1
NCBI taxonomy Id: 331678
Other names: C. phaeobacteroides BS1, Chlorobium phaeobacteroides MN1, Chlorobium phaeobacteroides str. BS1, Chlorobium phaeobacteroides strain BS1
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