Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ACE04187.1TIGRFAM: CRISPR-associated RAMP protein, Csm4 family; KEGG: mac:MA1934 hypothetical protein. (338 aa)    
Predicted Functional Partners:
ACE04186.1
TIGRFAM: CRISPR-associated RAMP protein, Csm3 family; PFAM: protein of unknown function DUF324; KEGG: chy:CHY_2142 CRISPR-associated RAMP protein, Csm3 family.
 
 
 0.995
ACE04188.1
TIGRFAM: CRISPR-associated RAMP protein, Csm5 family; PFAM: protein of unknown function DUF324; KEGG: tme:Tmel_1674 CRISPR-associated RAMP protein, Csm5 family.
 
 
 0.995
ACE04182.1
TIGRFAM: CRISPR-associated protein, Csm1 family; KEGG: mja:MJ1672 hypothetical protein.
 
 
 0.952
ACE04189.1
KEGG: sfu:Sfum_1350 conserved hypothetical cytosolic protein.
     
 0.808
ACE04185.1
TIGRFAM: CRISPR-associated protein, Csm2 family; KEGG: csc:Csac_0076 CRISPR-associated protein, Csm2 family.
       0.757
ACE04184.1
Transposase; KEGG: mma:MM_3343 transposase.
       0.539
ACE04183.1
Transposase; KEGG: mma:MM_3344 transposase.
       0.456
Your Current Organism:
Chlorobium phaeobacteroides BS1
NCBI taxonomy Id: 331678
Other names: C. phaeobacteroides BS1, Chlorobium phaeobacteroides MN1, Chlorobium phaeobacteroides str. BS1, Chlorobium phaeobacteroides strain BS1
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