STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ACE04189.1KEGG: sfu:Sfum_1350 conserved hypothetical cytosolic protein. (332 aa)    
Predicted Functional Partners:
ACE04186.1
TIGRFAM: CRISPR-associated RAMP protein, Csm3 family; PFAM: protein of unknown function DUF324; KEGG: chy:CHY_2142 CRISPR-associated RAMP protein, Csm3 family.
 
  
 0.906
ACE04188.1
TIGRFAM: CRISPR-associated RAMP protein, Csm5 family; PFAM: protein of unknown function DUF324; KEGG: tme:Tmel_1674 CRISPR-associated RAMP protein, Csm5 family.
 
   
 0.854
ACE04187.1
TIGRFAM: CRISPR-associated RAMP protein, Csm4 family; KEGG: mac:MA1934 hypothetical protein.
     
 0.813
ACE04185.1
TIGRFAM: CRISPR-associated protein, Csm2 family; KEGG: csc:Csac_0076 CRISPR-associated protein, Csm2 family.
       0.751
ACE04182.1
TIGRFAM: CRISPR-associated protein, Csm1 family; KEGG: mja:MJ1672 hypothetical protein.
 
  
 0.693
ACE04184.1
Transposase; KEGG: mma:MM_3343 transposase.
       0.536
cas2
CRISPR-associated protein Cas2; CRISPR (clustered regularly interspaced short palindromic repeat), is an adaptive immune system that provides protection against mobile genetic elements (viruses, transposable elements and conjugative plasmids). CRISPR clusters contain sequences complementary to antecedent mobile elements and target invading nucleic acids. CRISPR clusters are transcribed and processed into CRISPR RNA (crRNA). Functions as a ssRNA-specific endoribonuclease. Involved in the integration of spacer DNA into the CRISPR cassette.
 
   
 0.491
ACE05068.1
TIGRFAM: CRISPR-associated protein Cas5 family; CRISPR-associated protein Cas5; KEGG: cte:CT1976 hypothetical protein.
  
  
 0.485
ACE04183.1
Transposase; KEGG: mma:MM_3344 transposase.
       0.453
Your Current Organism:
Chlorobium phaeobacteroides BS1
NCBI taxonomy Id: 331678
Other names: C. phaeobacteroides BS1, Chlorobium phaeobacteroides MN1, Chlorobium phaeobacteroides str. BS1, Chlorobium phaeobacteroides strain BS1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.