Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ACE04260.1KEGG: hch:HCH_03617 hypothetical protein. (497 aa)    
Predicted Functional Partners:
ACE04258.1
KEGG: hch:HCH_03615 hypothetical protein.
       0.783
ACE04259.1
KEGG: hch:HCH_03616 hypothetical protein.
       0.783
ACE04261.1
KEGG: ana:all0050 unknown protein.
 
     0.751
ACE04499.1
KEGG: cch:Cag_1368 hypothetical protein.
  
     0.684
ACE04643.1
PFAM: proteinase inhibitor I4 serpin; KEGG: mem:Memar_0460 proteinase inhibitor I4, serpin; Belongs to the serpin family.
    
 0.634
ACE05032.1
KEGG: plt:Plut_0297 hypothetical protein.
  
     0.577
ACE03465.1
PFAM: Methyltransferase type 12; KEGG: pvi:Cvib_1458 methyltransferase type 11.
  
     0.543
ACE03300.1
PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: pvi:Cvib_1592 4Fe-4S ferredoxin, iron-sulfur binding domain protein.
  
     0.492
argH
TIGRFAM: argininosuccinate lyase; PFAM: fumarate lyase; KEGG: pvi:Cvib_0883 argininosuccinate lyase.
       0.443
Your Current Organism:
Chlorobium phaeobacteroides BS1
NCBI taxonomy Id: 331678
Other names: C. phaeobacteroides BS1, Chlorobium phaeobacteroides MN1, Chlorobium phaeobacteroides str. BS1, Chlorobium phaeobacteroides strain BS1
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