STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ACE04373.1ABC transporter-related protein; PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: cch:Cag_1498 ATPase. (514 aa)    
Predicted Functional Partners:
ACE04374.1
PFAM: inner-membrane translocator; KEGG: cch:Cag_1499 membrane protein; Belongs to the binding-protein-dependent transport system permease family.
 
 
 0.996
ACE03487.1
PFAM: inner-membrane translocator; KEGG: cte:CT1681 ABC transporter, permease protein; Belongs to the binding-protein-dependent transport system permease family.
 
 0.987
ACE04232.1
PFAM: basic membrane lipoprotein; KEGG: cch:Cag_0792 basic membrane protein A.
 
 
 0.985
ACE04372.1
PFAM: Alcohol dehydrogenase GroES domain protein; KEGG: pvi:Cvib_0966 alcohol dehydrogenase GroES domain protein.
       0.786
ACE04371.1
PFAM: membrane protein of unknown function; KEGG: cte:CT1196 hypothetical protein.
       0.675
ACE03656.1
PFAM: inner-membrane translocator; KEGG: cpy:Cphy_1259 inner-membrane translocator; Belongs to the binding-protein-dependent transport system permease family.
 
     0.528
folD
Methenyltetrahydrofolate cyclohydrolase; Catalyzes the oxidation of 5,10-methylenetetrahydrofolate to 5,10-methenyltetrahydrofolate and then the hydrolysis of 5,10- methenyltetrahydrofolate to 10-formyltetrahydrofolate.
       0.503
radA
DNA repair protein RadA; DNA-dependent ATPase involved in processing of recombination intermediates, plays a role in repairing DNA breaks. Stimulates the branch migration of RecA-mediated strand transfer reactions, allowing the 3' invading strand to extend heteroduplex DNA faster. Binds ssDNA in the presence of ADP but not other nucleotides, has ATPase activity that is stimulated by ssDNA and various branched DNA structures, but inhibited by SSB. Does not have RecA's homology-searching function.
       0.468
Your Current Organism:
Chlorobium phaeobacteroides BS1
NCBI taxonomy Id: 331678
Other names: C. phaeobacteroides BS1, Chlorobium phaeobacteroides MN1, Chlorobium phaeobacteroides str. BS1, Chlorobium phaeobacteroides strain BS1
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