Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
ACE04412.1PFAM: KWG Leptospira repeat protein; KEGG: cbh:CLC_1691 KWG leptospira repeat protein. (373 aa)    
Predicted Functional Partners:
ACE04413.1
PFAM: protein of unknown function DUF134; KEGG: pvi:Cvib_0826 protein of unknown function DUF134; Belongs to the UPF0251 family.
       0.778
ACE04411.1
PFAM: iron-containing alcohol dehydrogenase; KEGG: cte:CT0951 alcohol dehydrogenase, iron-containing.
       0.743
ACE04410.1
KEGG: bld:BLi03623 hypothetical protein.
       0.716
ACE05295.1
Hypothetical protein; KEGG: ana:alr2190 alpha-amylase.
  
    0.505
ACE04409.1
KEGG: cps:CPS_2960 hypothetical protein.
       0.447
ACE03652.1
KEGG: hch:HCH_01953 serine/threonine protein phosphatase.
  
 
 0.445
ACE04414.1
PFAM: C4-dicarboxylate transporter/malic acid transport protein; KEGG: pvi:Cvib_0825 C4-dicarboxylate transporter/malic acid transport protein.
       0.407
rnfA
Electron transport complex, RnfABCDGE type, A subunit; Part of a membrane-bound complex that couples electron transfer with translocation of ions across the membrane.
   
    0.404
Your Current Organism:
Chlorobium phaeobacteroides BS1
NCBI taxonomy Id: 331678
Other names: C. phaeobacteroides BS1, Chlorobium phaeobacteroides MN1, Chlorobium phaeobacteroides str. BS1, Chlorobium phaeobacteroides strain BS1
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