Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
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Co-occurrence
Co-expression
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[Homology]
Score
ACE04487.1KEGG: plt:Plut_1000 hypothetical protein. (59 aa)    
Predicted Functional Partners:
ACE03799.1
PFAM: alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen; Redoxin domain protein; KEGG: plt:Plut_1493 thiolredoxin peroxidase.
  
    0.617
ACE03274.1
KEGG: plt:Plut_1976 photosystem P840 reaction center, large subunit.
    
   0.585
ACE03275.1
PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: plt:Plut_1975 photosystem P840 reaction center iron-sulfur protein.
    
   0.585
ACE03537.1
KEGG: cte:CT1639 photosystem P840 reaction center cytochrome c-551.
    
   0.585
ACE03792.1
PFAM: bacteriochlorophyll A protein; KEGG: plt:Plut_1500 bacteriochlorophyll A protein.
    
   0.585
ACE04626.1
Hypothetical protein; KEGG: cch:Cag_1894 photosystem P840 reaction center protein PscD.
    
   0.585
ACE05275.1
KEGG: cch:Cag_1677 Ric1 protein.
    
 
 0.585
ACE04486.1
Major paralogous domain; KEGG: cch:Cag_0884 Fibrobacter succinogenes major paralogous domain.
 
     0.555
ACE03128.1
Ferric uptake regulator, Fur family; PFAM: ferric-uptake regulator; KEGG: tte:TTE1767 Fe2+/Zn2+ uptake regulation proteins; Belongs to the Fur family.
  
    0.506
ACE03167.1
Ferric uptake regulator, Fur family; PFAM: ferric-uptake regulator; KEGG: gur:Gura_0045 ferric uptake regulator, Fur family; Belongs to the Fur family.
  
    0.506
Your Current Organism:
Chlorobium phaeobacteroides BS1
NCBI taxonomy Id: 331678
Other names: C. phaeobacteroides BS1, Chlorobium phaeobacteroides MN1, Chlorobium phaeobacteroides str. BS1, Chlorobium phaeobacteroides strain BS1
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