Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ACE04494.1PFAM: plasmid stabilization system; KEGG: neu:NE1591 hypothetical protein. (100 aa)    
Predicted Functional Partners:
ACE04495.1
TIGRFAM: addiction module component, TIGR02574 family; PFAM: Putative addiction module component CHP02574 family protein; KEGG: neu:NE1592 hypothetical protein.
 
     0.936
ACE05160.1
KEGG: cch:Cag_1130 hypothetical protein.
  
     0.761
ACE05161.1
KEGG: cch:Cag_1129 hypothetical protein.
 
     0.595
ACE03112.1
TIGRFAM: addiction module component, TIGR02574 family; PFAM: Putative addiction module component CHP02574 family protein; KEGG: cch:Cag_1129 hypothetical protein.
 
     0.497
ACE04245.1
KEGG: dol:Dole_2271 hypothetical protein.
  
     0.470
ACE04096.1
TIGRFAM: addiction module antidote protein, CC2985 family; PFAM: protein of unknown function UPF0156; KEGG: fjo:Fjoh_4526 putative transcriptional regulators, CopG/Arc/MetJ family.
  
 
 0.449
Your Current Organism:
Chlorobium phaeobacteroides BS1
NCBI taxonomy Id: 331678
Other names: C. phaeobacteroides BS1, Chlorobium phaeobacteroides MN1, Chlorobium phaeobacteroides str. BS1, Chlorobium phaeobacteroides strain BS1
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