Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ACE04531.1KEGG: pvi:Cvib_1097 hypothetical protein. (194 aa)    
Predicted Functional Partners:
ACE03334.1
KEGG: plt:Plut_1902 hypothetical protein.
  
    0.632
ACE04209.1
KEGG: cch:Cag_0822 hypothetical protein.
  
     0.606
ACE04049.1
PFAM: phospholipid/glycerol acyltransferase; KEGG: cte:CT0967 hypothetical protein.
 
 
 0.519
rplF
Ribosomal protein L6; This protein binds to the 23S rRNA, and is important in its secondary structure. It is located near the subunit interface in the base of the L7/L12 stalk, and near the tRNA binding site of the peptidyltransferase center; Belongs to the universal ribosomal protein uL6 family.
    
  0.518
ACE03610.1
KEGG: cte:CT1560 hypothetical protein.
  
     0.507
ACE04616.1
PFAM: ferredoxin; KEGG: cte:CT0651 chlorosome envelope protein J.
  
 
   0.502
ACE03917.1
PFAM: protein of unknown function DUF164; KEGG: cch:Cag_1111 hypothetical protein.
  
     0.490
ACE03375.1
PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: cte:CT0249 glutathione S-transferase, fosfomycin resistance protein, putative.
 
     0.488
ACE04955.1
KEGG: cte:CT1560 hypothetical protein.
  
     0.484
ACE04899.1
PFAM: hydroxyneurosporene synthase; KEGG: pvi:Cvib_1502 hydroxyneurosporene synthase.
  
     0.480
Your Current Organism:
Chlorobium phaeobacteroides BS1
NCBI taxonomy Id: 331678
Other names: C. phaeobacteroides BS1, Chlorobium phaeobacteroides MN1, Chlorobium phaeobacteroides str. BS1, Chlorobium phaeobacteroides strain BS1
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