STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ACE04542.1KEGG: bav:BAV1041 outer membrane porin protein. (333 aa)    
Predicted Functional Partners:
ACE03397.1
KEGG: plt:Plut_1752 hypothetical protein.
   
 
 0.639
ACE05016.1
PFAM: domain of unknown function DUF1745; KEGG: ana:alr4881 unknown protein.
  
    0.554
ACE04629.1
PFAM: WD40 domain protein beta Propeller; KEGG: pvi:Cvib_1164 WD40 domain protein beta propeller.
   
 
 0.535
ACE04541.1
PFAM: DoxX family protein; KEGG: plt:Plut_0728 hypothetical protein.
  
    0.492
ACE03850.1
Protease Do; KEGG: plt:Plut_1467 peptidase S1C, Do; TIGRFAM: protease Do; PFAM: peptidase S1 and S6 chymotrypsin/Hap; PDZ/DHR/GLGF domain protein.
    
 
 0.479
ACE04584.1
TIGRFAM: type I secretion outer membrane protein, TolC family; PFAM: outer membrane efflux protein; KEGG: azo:azo0654 putative outer membrane efflux protein.
   
 
 0.450
ACE04445.1
PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: cte:CT0935 TonB-dependent receptor-related protein.
    
 
 0.446
Your Current Organism:
Chlorobium phaeobacteroides BS1
NCBI taxonomy Id: 331678
Other names: C. phaeobacteroides BS1, Chlorobium phaeobacteroides MN1, Chlorobium phaeobacteroides str. BS1, Chlorobium phaeobacteroides strain BS1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.