STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ACE04568.1Lysine 2,3-aminomutase YodO family protein; KEGG: plt:Plut_1576 protein of unknown function DUF160; TIGRFAM: lysine 2,3-aminomutase YodO family protein; PFAM: Radical SAM domain protein. (437 aa)    
Predicted Functional Partners:
ACE04570.1
PFAM: GCN5-related N-acetyltransferase; KEGG: pvi:Cvib_1365 GCN5-related N-acetyltransferase.
  
 0.964
ACE04349.1
KEGG: aoe:Clos_0418 lysine 2,3-aminomutase YodO family protein; TIGRFAM: lysine 2,3-aminomutase YodO family protein; PFAM: Radical SAM domain protein.
  
  
 
0.913
lysA
Diaminopimelate decarboxylase; Specifically catalyzes the decarboxylation of meso- diaminopimelate (meso-DAP) to L-lysine.
     
  0.800
ACE04567.1
PFAM: regulatory protein MarR; KEGG: plt:Plut_1577 transcriptional regulator, MarR family.
  
    0.778
ACE04569.1
TIGRFAM: SSS sodium solute transporter superfamily; PFAM: Na+/solute symporter; KEGG: pvi:Cvib_1366 SSS sodium solute transporter superfamily; Belongs to the sodium:solute symporter (SSF) (TC 2.A.21) family.
       0.762
ACE04566.1
Putative adenylate/guanylate cyclase; KEGG: cte:CT1059 hypothetical protein.
       0.467
ACE04571.1
PFAM: sodium/hydrogen exchanger; KEGG: sil:SPO2079 Na(+)/H(+) antiporter, homolog.
       0.467
Your Current Organism:
Chlorobium phaeobacteroides BS1
NCBI taxonomy Id: 331678
Other names: C. phaeobacteroides BS1, Chlorobium phaeobacteroides MN1, Chlorobium phaeobacteroides str. BS1, Chlorobium phaeobacteroides strain BS1
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