Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ACE04600.1PFAM: Domain of unknown function DUF1788; KEGG: dvu:DVU2026 hypothetical protein. (196 aa)    
Predicted Functional Partners:
ACE04599.1
KEGG: dvu:DVU2025 hypothetical protein.
 
   0.991
ACE04596.1
KEGG: dvu:DVU2022 hypothetical protein.
 
  
 0.972
ACE04594.1
KEGG: dvu:DVU2019 hypothetical protein.
 
  
 0.967
ACE04598.1
KEGG: dvu:DVU2024 hypothetical protein.
 
    0.944
ACE04601.1
PFAM: Protein of unkown function DUF1819 putative inner membrane; KEGG: maq:Maqu_0555 hypothetical protein.
 
     0.941
ACE04595.1
PFAM: PglZ domain protein; KEGG: dvu:DVU2020 hypothetical protein.
 
     0.938
ACE04597.1
KEGG: dvu:DVU2023 hypothetical protein.
       0.765
ACE04602.1
TIGRFAM: DNA binding domain protein, excisionase family; KEGG: dno:DNO_0183 conserved hypothetical protein VrlI.
       0.736
ACE04545.1
PFAM: protein of unknown function DUF814; KEGG: cte:CT0745 fibronectin-binding protein, putative.
  
   0.709
ACE03117.1
KEGG: ppd:Ppro_0140 transposase, IS4 family protein.
  
 
 0.700
Your Current Organism:
Chlorobium phaeobacteroides BS1
NCBI taxonomy Id: 331678
Other names: C. phaeobacteroides BS1, Chlorobium phaeobacteroides MN1, Chlorobium phaeobacteroides str. BS1, Chlorobium phaeobacteroides strain BS1
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