Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
ACE04607.1PFAM: protein of unknown function DUF179; KEGG: cte:CT0663 putative transcriptional regulator; Belongs to the UPF0301 (AlgH) family. (187 aa)    
Predicted Functional Partners:
ACE03751.1
Ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent; Catalyzes the reduction of ribonucleotides to deoxyribonucleotides. May function to provide a pool of deoxyribonucleotide precursors for DNA repair during oxygen limitation and/or for immediate growth after restoration of oxygen.
  
 0.957
ACE04608.1
PFAM: alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen; Redoxin domain protein; KEGG: plt:Plut_0636 bacterioferritin comigratory protein, thiol peroxidase, putative.
       0.785
ACE03363.1
PFAM: glutaredoxin 2; KEGG: pvi:Cvib_0697 glutaredoxin 2.
     
 0.765
ACE05324.1
Holliday junction resolvase YqgF; Could be a nuclease involved in processing of the 5'-end of pre-16S rRNA; Belongs to the YqgF nuclease family.
  
  
 0.711
ACE02991.1
DNA polymerase III, beta subunit; Confers DNA tethering and processivity to DNA polymerases and other proteins. Acts as a clamp, forming a ring around DNA (a reaction catalyzed by the clamp-loading complex) which diffuses in an ATP- independent manner freely and bidirectionally along dsDNA. Initially characterized for its ability to contact the catalytic subunit of DNA polymerase III (Pol III), a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria; Pol III exhibits 3'-5' exonuclease proofreading activity. The beta chain is required for initiation of [...]
  
 
 0.672
ACE03700.1
PFAM: Eco57I restriction endonuclease; KEGG: acr:Acry_2422 site-specific DNA-methyltransferase (adenine-specific).
   
    0.538
ACE04609.1
PFAM: NUDIX hydrolase; KEGG: plt:Plut_0635 NUDIX/MutT family protein.
       0.466
ACE04104.1
PFAM: band 7 protein; KEGG: cte:CT0796 band 7 family protein.
   
    0.461
ACE04942.1
PFAM: band 7 protein; KEGG: pvi:Cvib_1667 SPFH domain, band 7 family protein.
   
    0.461
ACE05409.1
KEGG: sru:SRU_0486 succinate dehydrogenase, membrane subunit, putative.
   
    0.419
Your Current Organism:
Chlorobium phaeobacteroides BS1
NCBI taxonomy Id: 331678
Other names: C. phaeobacteroides BS1, Chlorobium phaeobacteroides MN1, Chlorobium phaeobacteroides str. BS1, Chlorobium phaeobacteroides strain BS1
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