STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ACE04723.1Penicillin-binding protein 2; KEGG: plt:Plut_0571 peptidoglycan glycosyltransferase; TIGRFAM: penicillin-binding protein 2; PFAM: penicillin-binding protein transpeptidase; Penicillin-binding protein dimerisation domain. (610 aa)    
Predicted Functional Partners:
rodA
Rod shape-determining protein RodA; Peptidoglycan polymerase that is essential for cell wall elongation; Belongs to the SEDS family. MrdB/RodA subfamily.
 
 0.957
ACE05422.1
Peptidoglycan glycosyltransferase; PFAM: penicillin-binding protein transpeptidase; Penicillin-binding protein dimerisation domain; PASTA domain containing protein; KEGG: cte:CT0040 penicillin-binding protein 3.
  
  
 
0.923
ACE05417.1
PFAM: cell cycle protein; KEGG: cte:CT0035 cell division protein, FtsW/RodA/SpoVE family; Belongs to the SEDS family.
 
 0.878
ACE04738.1
KEGG: plt:Plut_0553 cell shape determining protein MreB/Mrl; TIGRFAM: cell shape determining protein, MreB/Mrl family; PFAM: cell division protein FtsA; cell shape determining protein MreB/Mrl; SMART: actin/actin family protein.
 
 
 0.837
ACE04721.1
Rod shape-determining protein MreC; Involved in formation and maintenance of cell shape.
 
 
 0.826
ACE04722.1
Signal transduction histidine kinase, LytS; TIGRFAM: rod shape-determining protein MreD; KEGG: cte:CT0567 hypothetical protein.
       0.787
ACE04724.1
D-lactate dehydrogenase (cytochrome); PFAM: FAD linked oxidase domain protein; KEGG: cte:CT0565 oxidoreductase, FAD-binding.
       0.786
ACE04990.1
Glutathione synthase; PFAM: RimK domain protein ATP-grasp; KEGG: cch:Cag_0947 D-alanine-D-alanine ligase and related ATP-grasp enzyme-like.
  
 
 0.772
smpB
SsrA-binding protein; Required for rescue of stalled ribosomes mediated by trans- translation. Binds to transfer-messenger RNA (tmRNA), required for stable association of tmRNA with ribosomes. tmRNA and SmpB together mimic tRNA shape, replacing the anticodon stem-loop with SmpB. tmRNA is encoded by the ssrA gene; the 2 termini fold to resemble tRNA(Ala) and it encodes a 'tag peptide', a short internal open reading frame. During trans-translation Ala-aminoacylated tmRNA acts like a tRNA, entering the A-site of stalled ribosomes, displacing the stalled mRNA. The ribosome then switches to [...]
       0.768
ACE05413.1
Polypeptide-transport-associated domain protein FtsQ-type; Essential cell division protein.
  
 
 0.636
Your Current Organism:
Chlorobium phaeobacteroides BS1
NCBI taxonomy Id: 331678
Other names: C. phaeobacteroides BS1, Chlorobium phaeobacteroides MN1, Chlorobium phaeobacteroides str. BS1, Chlorobium phaeobacteroides strain BS1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.