Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
ACE04732.1PFAM: Peptidase M23; KEGG: plt:Plut_0562 membrane-bound metallopeptidase-like. (436 aa)    
Predicted Functional Partners:
ACE04800.1
PFAM: protein of unknown function DUF214; KEGG: cch:Cag_0527 cell division protein, putative; Belongs to the ABC-4 integral membrane protein family. FtsX subfamily.
 
 
 
 0.910
ACE05356.1
N-acetylmuramoyl-L-alanine amidase; PFAM: cell wall hydrolase/autolysin; KEGG: cte:CT0054 N-acetylmuramoyl-L-alanine amidase.
 
 
 0.844
ACE03758.1
ABC transporter-related protein; PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: pvi:Cvib_1198 cell division ATP-binding protein FtsE.
 
 
 
 0.799
ACE05118.1
PFAM: Peptidase M23; KEGG: pvi:Cvib_0313 peptidase M23B.
 
   
 0.756
nadE
NAD+ synthetase; Catalyzes the ATP-dependent amidation of deamido-NAD to form NAD. Uses ammonia as a nitrogen source.
       0.708
ACE03311.1
KEGG: pvi:Cvib_1588 penicillin-binding protein, 1A family; TIGRFAM: penicillin-binding protein, 1A family; PFAM: glycosyl transferase family 51; penicillin-binding protein transpeptidase.
  
     0.680
ACE03547.1
PFAM: TPR repeat-containing protein; Tetratricopeptide TPR_3; Tetratricopeptide TPR_2 repeat protein; SMART: Tetratricopeptide domain protein; KEGG: cte:CT1629 TPR domain protein.
 
 
   0.563
ACE04537.1
PFAM: outer membrane efflux protein; KEGG: plt:Plut_0733 outer membrane efflux protein, putative.
  
    0.515
ACE04334.1
PFAM: peptidase M48 Ste24p; KEGG: ppd:Ppro_3278 peptidase M48, Ste24p.
 
 
   0.498
secD
Protein-export membrane protein SecD; Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. SecDF uses the proton motive force (PMF) to complete protein translocation after the ATP-dependent function of SecA.
  
     0.461
Your Current Organism:
Chlorobium phaeobacteroides BS1
NCBI taxonomy Id: 331678
Other names: C. phaeobacteroides BS1, Chlorobium phaeobacteroides MN1, Chlorobium phaeobacteroides str. BS1, Chlorobium phaeobacteroides strain BS1
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