Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ACE04857.1PFAM: protein of unknown function UPF0150; KEGG: cch:Cag_0609 hypothetical protein. (70 aa)    
Predicted Functional Partners:
ACE04858.1
KEGG: dsy:DSY3469 hypothetical protein.
 
 
 0.973
ACE04849.1
PFAM: YcfA family protein; KEGG: gme:Gmet_1322 YcfA-like.
   
 0.524
ACE04863.1
PFAM: YcfA family protein; KEGG: gme:Gmet_1322 YcfA-like.
   
 0.524
ACE04859.1
PFAM: protein of unknown function DUF86; KEGG: chy:CHY_2535 hypothetical protein.
       0.440
ACE04860.1
PFAM: DNA polymerase beta domain protein region; KEGG: mja:MJ1379 hypothetical protein.
       0.440
Your Current Organism:
Chlorobium phaeobacteroides BS1
NCBI taxonomy Id: 331678
Other names: C. phaeobacteroides BS1, Chlorobium phaeobacteroides MN1, Chlorobium phaeobacteroides str. BS1, Chlorobium phaeobacteroides strain BS1
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