Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ACE04871.1PFAM: DNA polymerase beta domain protein region; KEGG: mja:MJ1379 hypothetical protein. (96 aa)    
Predicted Functional Partners:
ACE04870.1
PFAM: protein of unknown function DUF86; KEGG: chy:CHY_2535 hypothetical protein.
 
 
 0.957
ACE04859.1
PFAM: protein of unknown function DUF86; KEGG: chy:CHY_2535 hypothetical protein.
 
 
 0.821
ACE04021.1
PFAM: protein of unknown function DUF86; KEGG: mma:MM_1164 hypothetical nucleotidyltransferase.
 
 
 0.815
ACE03823.1
PFAM: protein of unknown function DUF86; KEGG: lch:Lcho_0358 protein of unknown function DUF86.
 
 
 0.812
ACE04872.1
PFAM: S23 ribosomal protein; KEGG: gur:Gura_0834 S23 ribosomal protein.
       0.463
Your Current Organism:
Chlorobium phaeobacteroides BS1
NCBI taxonomy Id: 331678
Other names: C. phaeobacteroides BS1, Chlorobium phaeobacteroides MN1, Chlorobium phaeobacteroides str. BS1, Chlorobium phaeobacteroides strain BS1
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