Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ACE04938.1KEGG: sru:SRU_1533 hypothetical protein. (275 aa)    
Predicted Functional Partners:
ACE03554.1
KEGG: sru:SRU_1396 hypothetical protein.
  
     0.774
ACE03442.1
KEGG: cte:CT0480 hypothetical protein.
  
     0.735
ACE05148.1
KEGG: plt:Plut_0223 hypothetical protein.
  
     0.605
ACE05152.1
KEGG: cte:CT2013 hypothetical protein.
  
     0.603
ACE03924.1
KEGG: plt:Plut_1345 hypothetical protein.
  
     0.596
ACE03911.1
Putative transcriptional regulator; PFAM: AAA-4 family protein; KEGG: plt:Plut_1398 putative transcriptional regulator.
  
     0.536
ACE03003.1
PFAM: PpiC-type peptidyl-prolyl cis-trans isomerase; SurA domain; KEGG: pvi:Cvib_0012 PpiC-type peptidyl-prolyl cis-trans isomerase.
 
     0.524
ACE03329.1
PFAM: PpiC-type peptidyl-prolyl cis-trans isomerase; KEGG: pvi:Cvib_1572 PpiC-type peptidyl-prolyl cis-trans isomerase.
 
     0.505
ACE04936.1
PFAM: protein of unknown function DUF477; KEGG: cch:Cag_1773 hypothetical protein.
       0.497
ACE04937.1
PFAM: LemA family protein; KEGG: cch:Cag_1774 LemA family protein.
       0.497
Your Current Organism:
Chlorobium phaeobacteroides BS1
NCBI taxonomy Id: 331678
Other names: C. phaeobacteroides BS1, Chlorobium phaeobacteroides MN1, Chlorobium phaeobacteroides str. BS1, Chlorobium phaeobacteroides strain BS1
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