Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
bshCKEGG: cte:CT1558 hypothetical protein; Belongs to the BshC family. (563 aa)    
Predicted Functional Partners:
surE
Stationary-phase survival protein SurE; Nucleotidase that shows phosphatase activity on nucleoside 5'-monophosphates; Belongs to the SurE nucleotidase family.
       0.807
ACE03887.1
PFAM: LmbE family protein; KEGG: cch:Cag_1596 hypothetical protein.
 
   
 0.799
ACE04739.1
PFAM: glycosyl transferase group 1; KEGG: plt:Plut_0552 glycosyl transferase.
  
   
 0.784
ACE04950.1
PFAM: surface antigen (D15); Patatin; KEGG: pvi:Cvib_0421 surface antigen (D15).
 
     0.566
ACE05152.1
KEGG: cte:CT2013 hypothetical protein.
  
     0.432
Your Current Organism:
Chlorobium phaeobacteroides BS1
NCBI taxonomy Id: 331678
Other names: C. phaeobacteroides BS1, Chlorobium phaeobacteroides MN1, Chlorobium phaeobacteroides str. BS1, Chlorobium phaeobacteroides strain BS1
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