Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
ACE04980.1PFAM: OmpA/MotB domain protein; KEGG: nwi:Nwi_1814 OmpA/MotB. (350 aa)    
Predicted Functional Partners:
ACE04981.1
KEGG: pvi:Cvib_0400 hypothetical protein.
       0.686
ACE04542.1
KEGG: bav:BAV1041 outer membrane porin protein.
   
 0.625
ACE04889.1
KEGG: plt:Plut_0763 hypothetical protein.
   
 0.594
ACE03613.1
PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: sru:SRU_2108 TonB dependent receptor, putative.
    
 0.556
ACE04445.1
PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: cte:CT0935 TonB-dependent receptor-related protein.
     
 0.552
ACE03728.1
KEGG: cte:CT0523 hypothetical protein.
     
 0.468
ACE04629.1
PFAM: WD40 domain protein beta Propeller; KEGG: pvi:Cvib_1164 WD40 domain protein beta propeller.
 
 
 0.463
ACE03944.1
TIGRFAM: efflux transporter, RND family, MFP subunit; PFAM: secretion protein HlyD family protein; KEGG: cch:Cag_0987 secretion protein HlyD; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.
     
 0.456
ACE04582.1
TIGRFAM: type I secretion membrane fusion protein, HlyD family; PFAM: secretion protein HlyD family protein; KEGG: eba:ebA1805 HlyD family secretion protein.
     
 0.456
ACE04143.1
KEGG: pha:PSHAb0433 hypothetical protein.
   
 0.450
Your Current Organism:
Chlorobium phaeobacteroides BS1
NCBI taxonomy Id: 331678
Other names: C. phaeobacteroides BS1, Chlorobium phaeobacteroides MN1, Chlorobium phaeobacteroides str. BS1, Chlorobium phaeobacteroides strain BS1
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