Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ACE05008.1PFAM: Rhodanese domain protein; KEGG: ana:alr2407 hypothetical protein. (191 aa)    
Predicted Functional Partners:
ACE03893.1
KEGG: cte:CT1415 hypothetical protein.
 
     0.686
ACE03056.1
PFAM: Radical SAM domain protein; KEGG: cch:Cag_1591 hypothetical protein.
  
     0.648
ACE05261.1
PFAM: thiamineS protein; KEGG: gvi:gsr4366 molybdenum cofactor biosynthesis protein D.
 
  
 0.624
ACE04770.1
TIGRFAM: sulfur relay protein TusD/DsrE; PFAM: DsrE family protein; KEGG: cch:Cag_1952 DsrE protein.
  
 
 0.622
ACE04769.1
TIGRFAM: sulfur relay protein TusC/DsrF; PFAM: DsrE family protein; KEGG: cte:CT0856 DsrF protein.
    
 0.609
ACE05137.1
PFAM: aminotransferase class V; aromatic amino acid beta-eliminating lyase/threonine aldolase; KEGG: pvi:Cvib_0301 aminotransferase, class V.
   
 0.600
ACE04768.1
TIGRFAM: sulfur relay protein TusB/DsrH; PFAM: DsrH family protein; KEGG: cte:CT0857 DsrH protein.
    
 0.595
ACE03892.1
PFAM: glycosyl transferase family 2; KEGG: cte:CT1416 glycosyl transferase.
  
     0.578
ACE05007.1
PFAM: protein of unknown function DUF975; KEGG: cte:CT0738 hypothetical protein.
       0.549
rpsQ
Ribosomal protein S17; One of the primary rRNA binding proteins, it binds specifically to the 5'-end of 16S ribosomal RNA.
   
  0.546
Your Current Organism:
Chlorobium phaeobacteroides BS1
NCBI taxonomy Id: 331678
Other names: C. phaeobacteroides BS1, Chlorobium phaeobacteroides MN1, Chlorobium phaeobacteroides str. BS1, Chlorobium phaeobacteroides strain BS1
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