STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ACE05045.1PFAM: amine oxidase; FAD dependent oxidoreductase; KEGG: cch:Cag_0248 protoporphyrinogen oxidase, putative. (396 aa)    
Predicted Functional Partners:
hemE
Uroporphyrinogen decarboxylase; Catalyzes the decarboxylation of four acetate groups of uroporphyrinogen-III to yield coproporphyrinogen-III.
 
  
 0.745
ACE03491.1
KEGG: plt:Plut_1657 hypothetical protein.
  
    0.744
ACE05044.1
PFAM: MscS Mechanosensitive ion channel; KEGG: plt:Plut_0292 hypothetical protein.
       0.723
ACE03810.1
PFAM: major facilitator superfamily MFS_1; KEGG: pvi:Cvib_1297 major facilitator superfamily MFS_1.
 
     0.720
ACE03935.1
KEGG: cch:Cag_1145 hypothetical protein.
  
     0.646
ACE03108.1
PFAM: ferrochelatase; KEGG: pvi:Cvib_1664 ferrochelatase; Belongs to the ferrochelatase family.
  
  
 0.633
ACE03011.1
KEGG: cte:CT2257 hypothetical protein.
  
     0.626
ACE04917.1
PFAM: ribulose bisphosphate carboxylase large chain; KEGG: pvi:Cvib_0464 ribulose 1,5-bisphosphate carboxylase large subunit.
  
     0.599
ACE05046.1
PFAM: transferase hexapeptide repeat containing protein; KEGG: pvi:Cvib_0355 acetyltransferase, CysE/LacA/LpxA/NodL family.
       0.536
ACE05145.1
KEGG: pvi:Cvib_0292 phosphoribosyltransferase.
  
    0.534
Your Current Organism:
Chlorobium phaeobacteroides BS1
NCBI taxonomy Id: 331678
Other names: C. phaeobacteroides BS1, Chlorobium phaeobacteroides MN1, Chlorobium phaeobacteroides str. BS1, Chlorobium phaeobacteroides strain BS1
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