STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
xseBExonuclease VII small subunit; Bidirectionally degrades single-stranded DNA into large acid- insoluble oligonucleotides, which are then degraded further into small acid-soluble oligonucleotides; Belongs to the XseB family. (82 aa)    
Predicted Functional Partners:
xseA
Exodeoxyribonuclease VII, large subunit; Bidirectionally degrades single-stranded DNA into large acid- insoluble oligonucleotides, which are then degraded further into small acid-soluble oligonucleotides; Belongs to the XseA family.
  
 0.990
hemC
Porphobilinogen deaminase; Tetrapolymerization of the monopyrrole PBG into the hydroxymethylbilane pre-uroporphyrinogen in several discrete steps.
   
    0.553
ACE03381.1
PFAM: Polyprenyl synthetase; KEGG: pvi:Cvib_1546 geranyltranstransferase; Belongs to the FPP/GGPP synthase family.
  
  
 0.463
ACE04381.1
PFAM: Polyprenyl synthetase; KEGG: cte:CT1206 polyprenyl synthetase; Belongs to the FPP/GGPP synthase family.
  
  
 0.463
ACE05214.1
PFAM: Rhodopirellula transposase family protein; KEGG: eba:ebA5952 hypothetical protein.
       0.454
ACE04783.1
PFAM: cytoplasmic chaperone TorD family protein; KEGG: pvi:Cvib_1688 cytoplasmic chaperone TorD family protein.
  
     0.437
ACE05249.1
TIGRFAM: preprotein translocase, YajC subunit; PFAM: YajC family protein; KEGG: pvi:Cvib_0223 protein translocase subunit YajC.
  
  
 0.417
Your Current Organism:
Chlorobium phaeobacteroides BS1
NCBI taxonomy Id: 331678
Other names: C. phaeobacteroides BS1, Chlorobium phaeobacteroides MN1, Chlorobium phaeobacteroides str. BS1, Chlorobium phaeobacteroides strain BS1
Server load: low (22%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.