Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
ACE05271.1Hypothetical protein; KEGG: rfr:Rfer_1138 transposase, IS4. (53 aa)    
Predicted Functional Partners:
ACE04596.1
KEGG: dvu:DVU2022 hypothetical protein.
  
  
 0.719
ACE04594.1
KEGG: dvu:DVU2019 hypothetical protein.
  
  
 0.707
ACE04600.1
PFAM: Domain of unknown function DUF1788; KEGG: dvu:DVU2026 hypothetical protein.
  
 
 0.700
ACE04599.1
KEGG: dvu:DVU2025 hypothetical protein.
  
    0.687
ACE03697.1
KEGG: abu:Abu_1172 conserved hypothetical protein, putative DNA helicase.
  
    0.680
ACE04598.1
KEGG: dvu:DVU2024 hypothetical protein.
  
    0.672
ACE05270.1
PFAM: transposase IS4 family protein; KEGG: plt:Plut_0436 transposase-like.
       0.578
ACE04545.1
PFAM: protein of unknown function DUF814; KEGG: cte:CT0745 fibronectin-binding protein, putative.
  
    0.568
ACE03162.1
N-6 DNA methylase; PFAM: restriction modification system DNA specificity domain; putative RNA methylase; N-6 DNA methylase; KEGG: mgi:Mflv_0805 N-6 DNA methylase.
   
    0.466
Your Current Organism:
Chlorobium phaeobacteroides BS1
NCBI taxonomy Id: 331678
Other names: C. phaeobacteroides BS1, Chlorobium phaeobacteroides MN1, Chlorobium phaeobacteroides str. BS1, Chlorobium phaeobacteroides strain BS1
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