Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ACE05295.1Hypothetical protein; KEGG: ana:alr2190 alpha-amylase. (66 aa)    
Predicted Functional Partners:
ACE05294.1
KEGG: bte:BTH_II0778 hypothetical protein.
       0.550
ACE03180.1
KEGG: mba:Mbar_A3002 hypothetical protein.
  
 
 0.524
ACE04412.1
PFAM: KWG Leptospira repeat protein; KEGG: cbh:CLC_1691 KWG leptospira repeat protein.
  
    0.505
ACE05296.1
Hypothetical protein.
     
 0.481
ACE03741.1
PFAM: cyclase/dehydrase; KEGG: plt:Plut_0548 hypothetical protein.
  
     0.477
ACE05297.1
KEGG: kpn:KPN_04038 putative acetyltransferase.
     
 0.456
ACE05298.1
Hypothetical protein.
       0.445
ACE04261.1
KEGG: ana:all0050 unknown protein.
  
     0.414
Your Current Organism:
Chlorobium phaeobacteroides BS1
NCBI taxonomy Id: 331678
Other names: C. phaeobacteroides BS1, Chlorobium phaeobacteroides MN1, Chlorobium phaeobacteroides str. BS1, Chlorobium phaeobacteroides strain BS1
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