Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
ACE05367.1KEGG: pvi:Cvib_1726 alpha/beta hydrolase fold. (253 aa)    
Predicted Functional Partners:
ACE05366.1
PFAM: Alkaline phosphatase; KEGG: pvi:Cvib_1725 alkaline phosphatase; Belongs to the alkaline phosphatase family.
     
 0.779
rlpA-2
Rare lipoprotein A; Lytic transglycosylase with a strong preference for naked glycan strands that lack stem peptides.
 
 
   0.574
ACE05365.1
Dihydroorotate dehydrogenase; Catalyzes the conversion of dihydroorotate to orotate.
       0.522
ACE05369.1
PFAM: Methylated-DNA-[protein]-cysteine S-methyltransferase DNA binding; KEGG: gfo:GFO_0122 methylated-DNA-[protein]-cysteine S-methyltransferase.
       0.477
rnr
Ribonuclease R; 3'-5' exoribonuclease that releases 5'-nucleoside monophosphates and is involved in maturation of structured RNAs.
  
    0.467
Your Current Organism:
Chlorobium phaeobacteroides BS1
NCBI taxonomy Id: 331678
Other names: C. phaeobacteroides BS1, Chlorobium phaeobacteroides MN1, Chlorobium phaeobacteroides str. BS1, Chlorobium phaeobacteroides strain BS1
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